Juglans regia (English walnut): 108979482
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Entry
108979482 CDS
T05245
Name
(RefSeq) 5'-3' exoribonuclease 4-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
jre
Juglans regia (English walnut)
Pathway
jre04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
108979482
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
108979482
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
108979482
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
108979482
NCBI-ProteinID:
XP_035551584
UniProt:
A0A6P9EVF0
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All DBs
Position
11:complement(770271..786609)
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AA seq
971 aa
AA seq
DB search
MGVPAFYRWLADRYPQSIIEVVEEEPAGENGVDVSKPNPNGIEFDNLYLDMNGIIHPCFH
PEGKPPPTTYNDVFKSIFNYIDHLFSLVRPRKLLYLAIDGVAPRAKMNQQRSRRFRTAKD
AAEAEAEEERLRKEYEAEGRSLTPKETPETSDSNVITPGTQFMAVLSVALQYYIQSRLNH
NPGWRYTKVILSDSNVPGEGEHKIMSYIRLQRDLPGFNPNTRHCLYGLDADLIMISLATH
EVHFSILREVVTLPGHQERCFLCGQVGHLAAECRGRPGNEAENRNAVDDTPIHKKKYQFL
NLWVLREYLQYDMEIPNPPFEINFERVVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLM
HVYRSEFAAMGGYLTDAGEVLLDKVEHFIQSVAVYEDQIFQKRARIQQAFENNEEMKHKS
RRVSSEEIQAPVVDKIKLGEPGYKERYYAEKFNVSDLEEIDKVREDLVLKYVEGLCWVCR
YYYQGVCSWQWFYPYHYAPFASDLKDLVDLEITFFLGEPFKPFDQLMGTLPAASSSALPE
KYRKLMTDPTSPILQFYPSDFEVDMNGKRFAWQGVVKLPFIDEKKLLAATKKLEGTLTEE
EKVRNSKMFDLLYVHPGHPMGSQIIQYYRTYFHLPPHEKFLCEIDTNASGGMNGYLWLCE
RNNIKSIVPSPVSGLQDIYNNQILNVTYLNPRSHKHIPEPSKHVVMPKKVLTPIDVKPFP
LLWHEDNTGFRRQHGRERPQVPGAIAGPLLGEAAHRLVKNTLNIKTNDPSARFWEQSSYQ
NFPGNHTVSRPRPTGSSGYQRGFTEDPNYYHAHYNNFQGMTGKPRLHLISNGVQGDRQTY
RTQDRSQHQEPLRNLRTGVSALTIEESARTRPTAMMSPRLPAMMLPRMPNLGHATNLPNQ
LVQNVGAPPTPPPTWINKVPTANGPIYTRQENESWGTYEKPVKKVYQVKTCSPQDISDSG
NYFQNTSGTGH
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccggcgttttatcggtggctggctgaccggtacccgcagtcaattattgaa
gtggtggaggaagagccggccggagagaatggggtcgacgtgtcgaaaccgaatcccaat
ggcatagagtttgataacttgtatctggacatgaacgggatcattcacccttgctttcac
cccgagggcaagcctccacctaccacctacaatgatgtattcaaatcaatatttaattac
attgatcatctcttctcattagttcgtccaaggaagcttctttatttggcaattgatggg
gttgcaccaagggctaaaatgaatcaacaacgttctcggcgcttcagaactgcaaaagat
gcggctgaggcagaagctgaggaggaaaggttaaggaaagaatatgaagctgaggggaga
agtttgacccctaaagaaacacctgaaacttctgactcaaatgttattactcctggaact
caattcatggcagtgctctcagtagcacttcagtactatatacaatctagattgaaccac
aacccagggtggcgatatacaaaggttattctttctgactcaaatgtaccgggtgagggg
gagcacaaaatcatgtcatacattcgattgcaacgtgaccttcctggtttcaatccaaac
actcgccattgtctatatggtctggatgcagatctgattatgatatcattagctacacat
gaggttcatttttctattttaagagaggtggttacgctgcctgggcatcaggaaagatgt
tttctctgtggtcaggttggtcatctggcagctgaatgtcgtggtaggccaggtaatgaa
gctgaaaatcggaatgcagtggatgatactccaattcacaagaagaaatatcagtttctc
aatctgtgggtgttacgagagtatctgcaatatgatatggagattcccaaccctccattt
gagatcaactttgaacgggttgtagatgattttgtctttctgtgcttttttgttggcaat
gactttcttccacatatgccaacattggagatccgggagggtgccataaatttactgatg
catgtttatagaagtgagtttgctgctatgggtggttatcttactgatgcgggtgaggtt
ttgttagataaggttgaacactttatccagtctgttgctgtttatgaagatcaaatcttt
cagaagcgggctcgaattcagcaggcttttgagaataatgaagaaatgaaacataaatca
agaagagtgtcttctgaagagatacaggctccagtggtagacaagatcaagcttggggag
cccggatacaaagaaaggtattatgctgagaaatttaatgtatcagatttggaggaaatt
gacaaagttagagaagatttagtattaaagtatgtggaaggtttatgttgggtctgccgg
tattactaccaaggcgtttgctcctggcaatggttttatccctaccattatgctcctttt
gcttctgatctgaaagatcttgttgatttggaaattacttttttcttgggggagcctttt
aaaccctttgatcagctcatgggaacactgccagcagcaagttcaagtgctctgccagaa
aaatacagaaaattgatgaccgaccctacatcacctatccttcaattctatccgtctgat
tttgaggttgacatgaatggcaagcgctttgcatggcagggtgttgtcaagttgccgttc
attgatgagaagaagttgcttgctgcaacaaagaagcttgaaggaactttaacggaggaa
gagaaggttcggaatagcaagatgtttgatttactttatgtgcatcctggtcatcctatg
ggttcacaaattatccagtattatagaacctatttccatttacccccacatgagaaattt
ctttgtgagattgacacaaatgctagtggtggaatgaatggatacctttggttatgtgag
agaaataacataaaaagtatagtcccttcccctgtcagtggattgcaagacatatataac
aaccaaattttaaatgtaacataccttaatcctcggagccacaagcacatcccagaacct
tcaaaacatgtagtcatgcccaaaaaggttttaacacctatagatgttaaaccattccct
ctgttatggcatgaagacaacactggtttccggcggcagcatggcagagaaaggccacaa
gtccctggagcaatagcaggtccattactgggagaggcagctcatcgccttgtaaagaac
acacttaacatcaaaactaatgatccatctgccagattttgggagcaatcgtcttatcaa
aacttcccaggcaaccatacagtcagcagaccaaggccgactggatcctctgggtaccaa
aggggctttactgaagacccaaattattaccatgcacattacaataattttcaagggatg
acgggtaaacctaggttgcacctcatatcaaatggtgtgcaaggtgacaggcagacttat
aggacgcaagatagatcacaacatcaagaaccgctccgcaacctgaggactggggtatct
gctttgacaatagaagaaagtgcgagaaccagaccaactgcaatgatgtcacctaggcta
cctgcaatgatgttaccaaggatgccaaatttaggacacgcaacaaatctacccaaccag
cttgtgcagaatgtgggggctcctccaacaccaccccccacgtggatcaataaagtacca
actgcaaatggcccaatatatactagacaagagaatgaatcctggggaacttatgagaag
ccagtgaagaaggtttaccaggttaaaacttgcagtccccaggatatatcagattctgga
aactatttccagaatacgtcaggtactggacattag
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