Juglans regia (English walnut): 109001135
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Entry
109001135 CDS
T05245
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
jre
Juglans regia (English walnut)
Pathway
jre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109001135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
jre03041
]
109001135
Spliceosome [BR:
jre03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
109001135
Complex C
U5 SnRNP specific factors
109001135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
EF-G_D2
BipA_C
Ras
Motif
Other DBs
NCBI-GeneID:
109001135
NCBI-ProteinID:
XP_018833828
UniProt:
A0A2I4FQB7
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All DBs
Position
15:20062524..20072242
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AA seq
990 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDQESDREDEDEDLPDRPTEEAEASDGEDAAAASNGWITASN
DVDMDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVRNIKFEVGVKDS
SMYVPTQFLVGLMSNPILVRNVALIGHLQHGKTVFMDMLIEQTHHMSTFDVNSEKHLRYT
DTRIDEQERKISIKAIPMSLVLEDSNSKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLI
VDAAEGVMVNTERAIRHAIQDRLPIVVVINKVDRLITELKLPPKDAYFKLRHTLEVINNN
IAAATYAVGNVPVIDPVVGNVCFASATAGWSFTLQSFAKLYVKLHGIPFDADKFASRLWG
DIYYHPDARAFRKKPPVGGGERSFVQFVLEPLYKIYSQVIGEHKKSVESTLAELGVTLPN
AAYKLNVRPLLRLACSSVFGHSLGFTDMLVQHIPSPKAAATRKVDHIYTGPKDSMIYKAM
KNCDPDGPLMVNVTKLYPKSDCSVFDAFGRVYSGRIRTGQTVRVLGEGYSPDDEEDMTVK
EVTKLWVYQARDRTPIAEAPAGSWVLIEGVDASIMKTATLCDEDVGRYEDVYIFRPLQFN
TLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKD
LRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLESGLAEKIENG
AVSIDWNRKTIGEFFEKNYHWDVLASRSIWAFGPDKQGPNILLDDTLSGEVDKNLLNAVK
DSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMA
TPRLMEPMYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGF
ETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGM
SEDVSINKFFDEAMMVELAQQAADLHQQML
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagtttatatgacgagtttggaaactatattggacccgaaatcgagtctgac
caagagagtgacagagaggatgaagatgaggatcttccggacaggcccactgaagaggcc
gaggcatctgatggcgaggatgcagctgctgcttcaaatggttggataacggcctcgaat
gatgttgatatggataaccagattgtccttgctgaggacaaaaagtactacccaactgct
gaagaggtttatggtgaagatgttgaaacgcttgttatggatgaagatgagcagcctttg
gagcaaccgataattaaacctgttaggaatattaagtttgaggttggagtgaaggattct
tctatgtatgtcccaacccaatttctagtgggtctcatgtcaaatcccattttggtgcga
aatgttgccctcatcgggcaccttcagcacgggaaaactgtcttcatggatatgttaatt
gagcaaacacatcacatgtccacatttgatgtgaatagtgagaagcatttaaggtacaca
gatacgaggattgatgaacaagagagaaagatatcaattaaggcaattccaatgtcgctt
gttctggaggatagcaattcaaaatcatacctttgtaacataatggacacccctgggcat
gttaatttctctgatgaaatgactgctgccctcagacttgccgatggcgctgtattgatt
gtggatgctgctgaaggagtaatggtaaatacggagagggctatacgccatgcaatccaa
gatcgcctgcctattgtagttgtgatcaataaggttgacaggctgataacagaacttaaa
ctgcccccaaaggatgcttactttaagctaaggcatactctggaagtcattaataacaac
atagctgctgccacttatgccgttggcaatgtcccagttattgatccagttgttggaaat
gtttgttttgcaagtgctacagcaggatggtccttcactttacaatcatttgctaaacta
tacgtgaaactccatggaatcccatttgatgctgacaagtttgcatctcggctttgggga
gatatctactatcatccggatgcacgagcttttaggaagaaaccccctgtgggtggaggg
gaaagatcgtttgtccagtttgtgcttgaacccctttacaaaatatacagccaagtgatt
ggtgaacataaaaagagtgtggaatctactcttgccgaacttggtgtcactcttccaaat
gcagcttataaactaaatgtcaggcctttgctgaggctggcttgtagctcagtttttggc
cattccttgggctttactgatatgctggttcagcatataccttcccccaaagctgccgca
acaaggaaggttgatcatatatataccgggccaaaagactctatgatctacaaggccatg
aagaattgtgatccagatgggcccttaatggttaatgtgaccaagctatatcccaagtca
gactgtagtgtctttgatgcttttggcagggtttatagtggcaggattaggacagggcag
acagtacgtgttttaggagaaggttattccccagatgatgaggaagacatgactgtaaaa
gaagtaacaaaattatgggtttatcaagctcgggataggacaccaatagccgaggctcct
gctggttcttgggttctcattgaaggtgtggatgcttccattatgaaaactgccacactt
tgtgatgaggatgtgggacgttacgaggatgtatacatatttcggcctctccagttcaat
acacttccagttgtgaaaacggctactgagcctttaaatccaagtgagttgcctaaaatg
gtggagggtcttaggaagatcagcaagagctatcctctagccattactaaggttgaggag
tctggggagcacactattttaggtacaggagagctgtacttggattctatcatgaaagac
ctcagagagctctattctgaagtagaagtcaaggtagcagatcctgttgtttcattctgt
gaaaccgtggtggagtcttcatcaatgaaatgctttgctgaaacaccaaacaaaaagaat
aaaataaccatgattgctgagccgttggagagtggactcgcagagaaaattgagaatggt
gctgtaagcattgattggaatcgaaaaacaattggtgaattctttgagaagaactatcat
tgggacgtgcttgcttcgcgctcaatatgggcatttggccctgataagcaggggcctaac
attctattagatgacacgctctctggtgaagttgacaagaatttgctgaatgctgtcaag
gattccattgttcagggatttcaatggggtgctcgagagggacctctctgtgatgaacct
atcaggaatgttaaattcaaaatagttgatgctaggattgcccctgagccactgcatagg
ggatctggtcaaatcattcccacggctcgacgtgtggcctattcagctttccttatggca
accccacgccttatggaaccaatgtactatgtagagatacaaaccccaatcgattgtgtc
tctgcaatctacacagtgctttcccgcaggcgtgggcatgttacagctgatgttcctcaa
cctgggaccccagcttatattgttaaggcatttttacctgtcatagaatcatttggtttt
gagaccgacttgaggtaccatactcaaggacaagccttttgcctctcagtgtttgatcat
tgggctattgtgcctggggaccctctcgacaagagcattgttttgcgaccacttgaacca
gcaccaattcagcatcttgctcgagaatttatggtgaagacaaggcgtagaaagggaatg
agcgaggatgtgagcattaataaattctttgatgaggccatgatggtggagttggctcag
caggcagctgatcttcatcagcaaatgttgtga
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