Janibacter terrae: V3C34_07465
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Entry
V3C34_07465 CDS
T10608
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
jtr Janibacter terrae
Pathway
jtr03030
DNA replication
jtr03410
Base excision repair
jtr03420
Nucleotide excision repair
jtr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
jtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V3C34_07465 (ligA)
03410 Base excision repair
V3C34_07465 (ligA)
03420 Nucleotide excision repair
V3C34_07465 (ligA)
03430 Mismatch repair
V3C34_07465 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
jtr03032
]
V3C34_07465 (ligA)
03400 DNA repair and recombination proteins [BR:
jtr03400
]
V3C34_07465 (ligA)
Enzymes [BR:
jtr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
V3C34_07465 (ligA)
DNA replication proteins [BR:
jtr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
V3C34_07465 (ligA)
DNA repair and recombination proteins [BR:
jtr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
V3C34_07465 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V3C34_07465 (ligA)
MMR (mismatch excision repair)
DNA ligase
V3C34_07465 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V3C34_07465 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
RNA_lig_T4_1
HHH_8
Imm71
Motif
Other DBs
NCBI-ProteinID:
XAS62126
LinkDB
All DBs
Position
1500255..1502420
Genome browser
AA seq
721 aa
AA seq
DB search
MEGGVGALRQDGRVSEIPEDARHEWADLAEQASAAQFAYHVKDAPTISDAEYDRLIRRLQ
ELEEAHPSLRTPDSPTQTVGGAIFSTDFTAVDHLERMLSLDNAFEGDELLDWARRVEQEV
SGFHYLCELKIDGLAINLLYEGGRLTRALTRGDGRTGEDVTMNVRTIEGIPTRLDDSVHP
VPDLVEVRGEVFFRLEDFAELNAGLVEAGKPPFANPRNSAAGSLRQKDPRVTARRPLHML
VHGMGRREGFEVDSQSHAYELMASWGLPTSPHYQVFDSMTQVRSFITRVEQQRHDYDHEI
DGVVVKVDEIAVQRRLGTTSRSPRWAIAWKYPPEEVNTKLLDIRVNVGRTGRVTPFGVME
PVTVAGSTVSLATLHNAHEVRRKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEHEFVM
PTHCPACGTELAPQKEGDKDIRCPNSRTCPSQLRERLSSLAGRGAFDIEALGWEGAVGLL
DSGVLTDESGLFGLDAEDIAKVPLFTRAAKKSDPEELVHDGRVLSANGAKLVDNLQQAKE
QPLWRVLVALSIRHVGPTAARALAQHFGSMTAIREADEAALADVEGVGPTIAASVREWFD
GEGNEWHGGIVDQWAADGVRMEDERDESITQTLEGVTVVVTGSLERYSRDSAKEAILERG
GKASGSVSKKTDWVVVGDNAGTKEAKARELGRPILTEDEFTELLETGSVARFSESEGEES
S
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggaagggggtgtcggtgccctgcggcaggatggtcgggtgagcgagatccccgaggac
gcccggcacgagtgggccgacctggccgagcaggcgagcgctgcccagttcgcctaccac
gtcaaggacgcgccgacgatcagcgatgcggagtacgaccgcctgatccggcggctgcag
gagctcgaggaggcgcacccctccctgcgcacccccgactcgccgacgcagacggtcggc
ggcgcgatcttctcgaccgacttcaccgccgtcgaccacctcgagcggatgctcagcctc
gacaacgccttcgagggcgacgagctgctcgactgggcgcgccgggtcgagcaggaggtc
tccgggttccactacctctgcgagctcaagatcgacggcctggccatcaacctcctgtac
gaagggggtcggctcacccgcgcgctgacgcgcggtgacgggcgcaccggtgaggacgtg
acgatgaacgtccggaccatcgagggcatcccgacccggctcgacgacagcgtccacccg
gtgcccgacctcgtcgaggtccggggcgaggtcttcttccggctcgaggacttcgccgag
ctcaacgcgggcctcgtcgaggcgggcaagccccccttcgccaacccgcgcaactcggcc
gccggatccttgcggcagaaggacccgcgcgtcaccgcccgccggccgctgcacatgctc
gtgcacgggatggggcggcgcgagggcttcgaggtcgacagccagagccacgcctacgag
ctgatggcgtcgtgggggctgcccacctcgccgcactaccaggtcttcgactcgatgacc
caggtgcgcagcttcatcacgcgcgtcgagcagcagcgccacgactacgaccacgagatc
gacggcgtggtcgtcaaggtcgacgagatcgccgtgcagcgtcggctcggcacgacctcg
cgctccccgcggtgggcgatcgcgtggaagtacccgcccgaggaggtcaacaccaagctc
ctcgacatccgggtcaacgtcggacgcacggggcgggtcacccccttcggcgtcatggag
cccgtcacggtcgccggctcgacggtctccctcgcgaccctgcacaacgcccacgaggtc
aggcgcaagggcgtgctcatcggcgacaccgtcgtcctgcgcaaggcaggcgacgtcatc
cccgagatcctcggcccggtcgtcgacctgcgcgacgggagcgagcacgagttcgtcatg
ccgacccactgcccggcgtgcggcaccgagctcgccccgcagaaggagggcgacaaggac
atccgctgccccaactcgcggacctgccccagccagctgcgcgagcggctctcctcgctg
gccggccggggcgccttcgacatcgaggcgctcggctgggagggtgcggtcgggctgctc
gactccggcgtgctcaccgacgagtccgggctcttcgggctggacgccgaggacatcgcc
aaggtgccgctcttcacccgggcggcgaagaagagcgacccggaggagctcgtccacgac
gggcgggtgctctcggccaacggcgccaagctcgtcgacaacctgcagcaggccaaggag
cagccgctatggcgcgtgctcgtggcgctgtcgatccggcacgtcgggccgacggccgcg
cgggcgctcgcccagcacttcgggtcgatgaccgcgatccgcgaggccgacgaggcggcg
ctcgccgacgtcgagggcgtcggtccgacgatcgccgcgtcggtgcgcgagtggttcgac
ggcgagggcaacgagtggcacggcggcatcgtcgaccagtgggccgccgacggcgtgcgc
atggaggacgagcgcgacgagtccatcacccagacgctcgagggcgtcacggtcgtcgtc
acgggctcgctcgagcggtactcccgcgacagcgccaaggaggcgatcctcgagcgcggc
ggcaaggcctcgggctcggtgagcaagaagaccgactgggtcgtcgtcggcgacaacgcc
ggcaccaaggaggccaaggcgcgcgagctcggccggccgatcctcaccgaggacgagttc
accgagctgctcgagaccggcagcgtggcgcgcttctcggagagcgagggggaggagagc
tcgtga
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