Jeongeupia wiesaeckerbachi: R0382_002855
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Entry
R0382_002855 CDS
T11114
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
jwk Jeongeupia wiesaeckerbachi
Pathway
jwk03030
DNA replication
jwk03410
Base excision repair
jwk03420
Nucleotide excision repair
jwk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
jwk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R0382_002855 (ligA)
03410 Base excision repair
R0382_002855 (ligA)
03420 Nucleotide excision repair
R0382_002855 (ligA)
03430 Mismatch repair
R0382_002855 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
jwk03032
]
R0382_002855 (ligA)
03400 DNA repair and recombination proteins [BR:
jwk03400
]
R0382_002855 (ligA)
Enzymes [BR:
jwk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
R0382_002855 (ligA)
DNA replication proteins [BR:
jwk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
R0382_002855 (ligA)
DNA repair and recombination proteins [BR:
jwk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
R0382_002855 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R0382_002855 (ligA)
MMR (mismatch excision repair)
DNA ligase
R0382_002855 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
R0382_002855 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XVK51358
LinkDB
All DBs
Position
2927584..2929980
Genome browser
AA seq
798 aa
AA seq
DB search
MTASDPVSRAAELRALLHRYGHEYYVLDAPSVPDGEYDRLFRELEAIEAAHPALKSTDSP
TQRVGGKPLPQFQPVPHAVPMLSIRTETDVTAQGALAFDASVRKELALTEADAPVDYAAE
LKFDGLAISLRYEGGVLVRAATRGDGVTGEDVTQNIRTVGQIPLRLFGNAPPLLEVRGEV
YMRRDDFDAMNEKQLAAGAKTFVNPRNAAAGAVRQLDPAIAATRPLSFFAYGVGEVSGWE
GAPAAHSALLDALAGFGLPVCAERVRTQGGAGLAAFHDRVAGLRAALPFDIDGVVYKVDA
LALQQELGFRSREPRWAVAHKFPAQEMLTTVEAIDVQVGRTGAITPVARLQPVFVGGVTV
TNATLHNEDEVRRKDVRVGDTVIVRRAGDVIPEVVGVVLERRPMVDEAGGDLFSPVQRPQ
YAPFELPKACPVCGSHVVREEGETIARCSGGLFCSAQRKEAIRHFAGRRMMDIEGLGERY
IDNLVDLDYVHGIADLYRLTLADLLEMKQRADERDGMVPETVKAGQVASKWAENLIDGIA
ASKRPPLARLLFALGIRHVGESTAKTLADWFGDLALIRQAPAPLLRVLPDVGATVADSIA
DFFAEPKNQQALDALLAAGVAPADTHAPSAAWRDKLAPAELYAALGVAKLTPVRARQLAE
VAPSPQALIDLDESTLSGLPADVRASLLAWLANAENGAMLRALGAQRDALLESLPADLAP
QGVLSGKTLVLTGALPSLTRDEAQAMIEAAGGKVSGSVSKKTDYVVAGEAAGSKLAKAES
LSVAVLDEQGLRALLGGV
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgactgcttccgatcccgtttcccgtgctgctgaacttcgcgcactgttgcatcgctac
ggtcacgagtattacgtgcttgatgcgccgagcgtgcccgatggcgaatacgaccgcctg
ttccgcgagcttgaagccattgaggctgcgcatccggcgctgaagtcgaccgattcgccg
acgcagcgtgtcggcggcaagcccttgccacaattccagccggtgccgcacgccgtgccg
atgctgtcgatccgtaccgagaccgacgtgaccgcgcaaggggcgttggcgttcgacgcc
agcgtgcgcaaggagctggcgctgaccgaggccgatgcgccggtcgactacgcggccgag
ctgaagttcgacggcttggcgatcagtctgcgctacgagggtggcgtgctggtccgtgcc
gcgacgcggggcgatggcgtgaccggtgaggatgtaacgcagaacatccgtaccgtcggg
cagatcccgctacgcttgtttggcaatgcaccaccgctgctcgaggtgcgtggcgaggtc
tatatgcgtcgggacgactttgacgccatgaacgagaaacagcttgctgcgggcgccaag
accttcgtgaacccgcgcaatgcggcggccggcgcggtgcgccagctcgatcctgcgatc
gcagcgacgcggcccttgtcgttctttgcttacggtgttggcgaagtgtcgggctgggag
ggggcgccagcggcgcattcggcgctgctcgatgcgttggcaggcttcggcctgccggtc
tgtgccgagcgggttcgtacgcaaggcggcgccggattggctgcgttccacgaccgggtg
gccggactgcgggcggcgctaccgttcgatatcgatggtgtggtctacaaggtcgatgcg
ctggcgttgcagcaggagctgggcttccgcagtcgcgagccgcgctgggcggttgcgcac
aagttcccggctcaggaaatgctgacgacggtcgaggcaatcgatgtgcaggtcggccgg
accggggcgatcacgccggtggcacggctgcagccggtctttgtcggtggcgttaccgtc
accaatgccacgctgcacaatgaagatgaggtgcgccgcaaggacgtgcgcgttggcgat
acggtgatcgtccgtcgcgccggcgatgtgattcccgaagtggtgggcgtggtgctcgaa
cggcggccgatggtcgacgaggcgggtggtgacctgttttcgccagtgcagcggccgcaa
tacgcgccgttcgaattgccgaaagcgtgtccggtctgcggctcgcacgtggtgcgcgaa
gagggcgagacgattgctcgctgctctggcgggctgttttgctcggcccagcgcaaagag
gcgatccggcactttgccgggcgacggatgatggacattgagggccttggcgagcgctat
atcgacaatctggtcgatctcgactacgtccacggcattgccgatctgtaccggctgacc
ctggccgatttgctggaaatgaagcagcgtgccgacgagcgcgatggcatggtgccggaa
accgtcaaggcggggcaggtggccagcaagtgggccgaaaacctgatcgacggcatcgcc
gcgagcaagcgtccgccgttggcgcgcttgctgtttgcgctcggtatccgccacgtcggt
gagtcgacggccaaaacgctggccgattggtttggcgatctggcgctgatccgtcaggcg
ccggcgccgctgttgcgggtgctgcccgacgtcggggcgacggtcgccgattcgatcgcc
gatttctttgccgagccgaaaaaccagcaggcgctcgatgcgctgctggctgccggcgtt
gcgccggccgatacgcatgcgccgagcgcggcgtggcgcgacaaactggcgccggccgaa
ctgtacgcggcgctcggcgtggcaaagctcacaccggtgcgcgcgcgccagcttgccgaa
gtggcgccttcgccgcaggccttgattgaccttgatgagtcgacgctgtccgggttgcct
gccgatgtgcgtgcgtcgctgttggcatggctggcgaatgcggagaacggtgcaatgctg
agggcgctgggtgcacagcgtgacgccttgctggagtcgctgccggctgatctggcgccg
cagggggtgttgtccggtaaaacgctggtgctgactggggcgttgccgtcgctgacgcgc
gacgaggcgcaggccatgatcgaagctgccggtggcaaggtgtcgggcagtgtgtcgaag
aaaaccgactatgtcgtcgctggcgaggctgcggggtcgaagctggccaaggcggagtcg
ctcagcgtggcggtgctggatgagcagggtttgcgtgcgttgctgggtggcgtttag
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