Kaistia sp. 32K: K32_30330
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Entry
K32_30330 CDS
T06998
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kai
Kaistia sp. 32K
Pathway
kai03030
DNA replication
kai03410
Base excision repair
kai03420
Nucleotide excision repair
kai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K32_30330 (ligA)
03410 Base excision repair
K32_30330 (ligA)
03420 Nucleotide excision repair
K32_30330 (ligA)
03430 Mismatch repair
K32_30330 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kai03032
]
K32_30330 (ligA)
03400 DNA repair and recombination proteins [BR:
kai03400
]
K32_30330 (ligA)
Enzymes [BR:
kai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K32_30330 (ligA)
DNA replication proteins [BR:
kai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K32_30330 (ligA)
DNA repair and recombination proteins [BR:
kai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K32_30330 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K32_30330 (ligA)
MMR (mismatch excision repair)
DNA ligase
K32_30330 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K32_30330 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
BCP54416
UniProt:
A0A7R7T7W7
LinkDB
All DBs
Position
complement(3241717..3243858)
Genome browser
AA seq
713 aa
AA seq
DB search
MPSDLLREIPVETLKADEAAAEHQRLSAEIAENDLRYHQDDAPTISDADYDALRRRLVAI
EGRFPDLISAASVSVGAAPSAKFAKVPHVVPMLSLDNAFDDQDVVDFIDRARRFLKIDGA
IPFTAEPKIDGLSLSLRYEGGRLVTAATRGDGFEGENVTVNARTIGDIPQTLPAGVPEIV
EIRGECYMAHADFEALNARMAAAGGGKTFANPRNAAAGSLRQLDPKITASRPLRFFAYAW
GEMSALPAETQMGMVEAFASWGLPTNPRMILCQTVEEALAFYHALETDRAGLGYDIDGVV
YKVNSLALQNRLGFVSRSPRWAVAHKFAAEQAVTVLNGIDIQVGRTGALTPVAKLEPITV
GGVVVSNATLHNEDYIKGIGGDGLPIRDGVDIRVGDTVVVQRAGDVIPQIVSVMLDRRPE
NSVRYEFPTICPVCGSHAVREEDEAVRRCTGGLICAAQAVERIRHFVSRNAFDIEGLGEK
QVQAFHEWGLIKEPADIFTLEARDAGQLQRLKNRDGFGETSARNLFAAINERRTIALNRF
IYALGIRHVGETNAKRFARHFGTVEAFRDTGLAARPPGPELLKGNDAWVELVGIEGIGAV
VAEAVVDFFDEPHNRDAFARLLEEVTPQPLEAAKTDSPVAGKTVVFTGTLVRMTRDEAKA
MAERLGAKVAGSVSKKTDLLVAGPGAGSKLKSAAENGVEVIDEDGWFTLVGAD
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcggatttgttgcgcgagataccggtcgagacgctgaaggcggacgaagccgcc
gcggagcaccagcgtctcagcgccgagatcgccgaaaacgatctccgctaccatcaggac
gacgcgccgaccatttcggacgccgactatgacgcgctccgccgccggctggttgcgatc
gagggccgctttccggacctgatctcggcggccagcgtctccgtcggcgccgcgccctcg
gccaagttcgccaaggtgccgcatgtcgtgccgatgctgtcgctcgacaacgccttcgac
gaccaggacgtggtcgatttcatcgatcgggcccggcgcttcctgaagatcgacggcgca
ataccgttcacggccgagccgaagattgacggcctgtcgctgtcgctgcgctacgagggc
ggccgcctcgtcaccgccgcgacgcgcggcgacggttttgagggcgagaacgtcaccgtc
aacgcccgcacgattggcgatattccgcaaacgctcccggccggcgtgcccgagatcgtc
gagatccgcggcgaatgctacatggcgcatgccgacttcgaggcgctgaacgcgcgcatg
gcggcggcgggcggcggcaagaccttcgccaatccgcgcaacgcggccgccggctcgctg
cgccagctcgacccgaagatcaccgcgtcgcgacccctgcgcttcttcgcctatgcctgg
ggcgagatgagcgcgctgccggccgagacgcagatgggcatggtcgaggcctttgcaagt
tggggcctgccgaccaacccgcgcatgatcctctgccagacggtcgaggaggcgctcgcc
ttctatcacgcgctcgaaaccgatcgcgccgggctcggctacgacattgacggcgtcgtc
tacaaggtgaactcgctcgccctgcagaaccggctcggcttcgtctcgcgcagcccgcgc
tgggcggtcgcgcacaaattcgccgccgagcaggccgtgaccgtgctgaacggcatcgat
attcaggtcggccgcaccggcgcgctgacgccggtcgccaaactggagccgatcaccgtc
ggcggcgtcgtcgtctccaatgcgacgctgcacaacgaggattatatcaagggcatcggc
ggcgacggcctgccgatccgcgacggcgtcgacatccgcgttggcgacacggtcgtcgtg
cagcgggccggcgacgtcatcccgcagatcgtctcggtgatgctcgaccggcgcccggaa
aattccgttcggtatgaatttccgacgatctgtcccgtttgcggcagccatgccgtgcgc
gaggaggacgaggcggtccgccgctgcacgggcggcctgatctgcgccgcgcaggcggtc
gagcgcatccgccatttcgtctcgcgcaacgccttcgacatcgaggggttgggcgagaag
caggtgcaggctttccacgagtggggcctgatcaaggagccagccgacatcttcacgctg
gaggcgcgcgacgcgggtcagctgcagcggctgaagaaccgcgacggtttcggcgagacc
tcggcgcgcaatctcttcgcggcgatcaacgagcgccgcacgatcgcgctcaaccgcttc
atctatgcgctcggcatccgccatgtcggcgagaccaacgccaagcgcttcgcccgtcat
ttcggtaccgtcgaggcgttccgcgatacggggctggcggcgcgtccgccggggccggag
ctgctgaagggcaacgacgcctgggtcgaactggtcggcatcgaggggatcggcgctgtt
gtcgccgaggccgtcgtcgacttcttcgacgaaccgcacaatcgcgacgccttcgccagg
ctgctggaagaggtcacgccgcagccgctcgaggctgccaagacggacagcccggtcgcc
ggcaagacggtcgtgtttaccggcacgctggtgcgcatgacccgcgacgaggccaaggcg
atggcggagcggctcggcgccaaggtcgccggatcggtctcgaagaagacggatcttctg
gtcgcggggcccggcgccggatccaagcttaaatccgccgccgaaaacggcgtcgaggtg
atcgacgaggatggctggttcacgctggtcggcgcggactga
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