Ketobacter alkanivorans: Kalk_19090
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Entry
Kalk_19090 CDS
T05294
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kak
Ketobacter alkanivorans
Pathway
kak03030
DNA replication
kak03410
Base excision repair
kak03420
Nucleotide excision repair
kak03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Kalk_19090
03410 Base excision repair
Kalk_19090
03420 Nucleotide excision repair
Kalk_19090
03430 Mismatch repair
Kalk_19090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kak03032
]
Kalk_19090
03400 DNA repair and recombination proteins [BR:
kak03400
]
Kalk_19090
Enzymes [BR:
kak01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Kalk_19090
DNA replication proteins [BR:
kak03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Kalk_19090
DNA repair and recombination proteins [BR:
kak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Kalk_19090
NER (nucleotide excision repair)
GGR (global genome repair) factors
Kalk_19090
MMR (mismatch excision repair)
DNA ligase
Kalk_19090
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Kalk_19090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH
HHH_3
PTCB-BRCT
AphA_like
Motif
Other DBs
NCBI-ProteinID:
AUM14402
UniProt:
A0A2K9LQ28
LinkDB
All DBs
Position
4460950..4463004
Genome browser
AA seq
684 aa
AA seq
DB search
MASTDHQTEQTIKQQIDQLREQLREHNYLYYVLDEPSIPDVEYDRLFQQLKQLETAHPEL
ISSDSPTQRVGAQPLAAFQQVQHRIPMLSLDNVFNEEELIAFDRRIRERLNVEGEIQYVC
EPKLDGLAVSLLYENGVLVQAATRGDGQTGEDITMNIRTIESIPLRLRGDDYPQILEVRG
EVFMPKAGFNRLNEKAIERGEKTFANPRNAAAGSLRQLDSSITRQRPLDMYCYSVGYVEG
GDLADTHHGNLMRLKGWGMRVNPEIEVATGANELQSYHDRILAKRNALEYEIDGIVYKVN
DLKLQRELGFVSRAPRWATAHKFPAQEELTTLLGVEFQVGRTGAITPVARLQPVFVGGVT
VSNATLHNMDEVARMDVRIGDTVIVHRAGDVIPKVVKVVLERRPNDAEPVLMPSVCPVCG
SDITKAEGEAVVRCSGGLFCQAQVKEAIKHFASRKAMDVDGLGDKLVEQMVDQGLIAHVS
DLYRLKAEQLAAMERMGDKSAHNLITALENSKSTTLPRFLFALGIREVGEATALNLANYF
GNLAALKQADADTLQQVPDVGPIVANHIVAFFQQDHNLEIIDALLAAGVHWQEQQAVDRD
SLPLAGQTYVLTGTLTQMTRDEAKQYLLDLGAKVSGSVSKMSDAVVAGEKAGSKLSKAES
LGVPVLDETAFIQLLQEHGIQPIQ
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggcctcaacagaccatcaaacagaacagacaataaaacagcagatcgatcagctgcgg
gagcagctcagagagcacaactatctttactatgtgttggatgagccctctattcctgat
gtggaatacgatcgtttatttcagcagttgaagcagctggaaacagcccatcctgaattg
atttcgtcagattcacctacccagcgtgttggtgcccaacctcttgctgcttttcagcaa
gtgcagcaccgcattcctatgttgtcgttagacaacgtctttaacgaagaagaattgatc
gcttttgatcgccgaattcgtgagcgcctgaacgttgagggtgaaatccagtacgtctgt
gagcccaagctggatggcttggcggtgagtcttttatacgaaaacggtgtactggtgcag
gcggctacccgcggtgatggccaaacaggtgaagacatcaccatgaatattcgtaccatc
gaatctattccattgcggttacgtggcgacgattacccgcagattttggaagtgcgtggc
gaagtgtttatgcctaaagccggttttaaccggctcaatgagaaggccatcgagcgtggg
gagaaaacgttcgccaatcctcgtaatgcggcggcggggagtttgcggcagcttgattcc
agcatcacccgtcaacgcccattggatatgtattgctacagcgtgggttatgtggagggc
ggagatttagcggacacccatcacggtaatttgatgcgcttaaaggggtggggaatgcgg
gttaatccagagatagaggtcgccactggagccaatgaactgcaatcctaccatgatcgt
attcttgccaaacgcaatgcactcgaatacgaaattgatggcattgtgtataaggtcaat
gacctaaaactacagcgtgaattgggctttgtctcccgcgcgccacgctgggcaaccgcc
cataagttccctgcccaggaagaactcactacgctattgggcgtagagtttcaggtaggt
cgcaccggtgccattacgccggtggcacgattgcagccagtgtttgtgggtggggtaacc
gtcagcaatgccacgttgcacaatatggatgaagtggcgcggatggacgtgcgcataggc
gatactgtcatcgtgcaccgcgctggcgatgttattccaaaagtagtaaaggtggtgctt
gagcgcaggccaaatgatgccgagcctgtgcttatgcccagcgtttgtccggtttgcggt
tctgatattaccaaagcagagggcgaggcggtggtccgttgttcgggtggcttgttctgt
caggcgcaggtaaaagaagccatcaaacactttgcctcccgtaaagccatggatgtagat
gggctgggggataaactcgtagagcagatggtggatcaaggtttgatcgcccatgtgtcg
gatctttaccgcttgaaagccgaacagctcgctgccatggagcgcatgggtgataagtct
gcccacaatctgattacagcgctggagaacagtaaatccacaacgttgcctcgattcctg
tttgcgttgggtattcgtgaggtgggggaggctacagccctcaacctggcgaattacttt
ggcaatctggccgcactcaagcaggccgatgccgatactttgcagcaggttccggacgtc
ggcccaatagtggctaatcatatagtagcgttctttcagcaggatcataatctggaaatc
atcgacgcattgctggccgctggtgtgcactggcaggagcagcaggcagtagatcgggac
tctttgccactggcggggcagacctatgtgctaaccggaacccttacacaaatgacgagg
gatgaagccaagcaatatttgcttgatttgggagcaaaagtcagtggcagtgtgtcgaag
atgagcgatgctgtggtggctggcgaaaaagcaggctccaaattaagcaaagcagaatcc
cttggtgttcctgttttggatgagactgcgtttattcagttattgcaagagcacggaatt
cagccaattcagtaa
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