Kordia antarctica: IMCC3317_01200
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Entry
IMCC3317_01200 CDS
T06371
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kan
Kordia antarctica
Pathway
kan03030
DNA replication
kan03410
Base excision repair
kan03420
Nucleotide excision repair
kan03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IMCC3317_01200 (ligA)
03410 Base excision repair
IMCC3317_01200 (ligA)
03420 Nucleotide excision repair
IMCC3317_01200 (ligA)
03430 Mismatch repair
IMCC3317_01200 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kan03032
]
IMCC3317_01200 (ligA)
03400 DNA repair and recombination proteins [BR:
kan03400
]
IMCC3317_01200 (ligA)
Enzymes [BR:
kan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IMCC3317_01200 (ligA)
DNA replication proteins [BR:
kan03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IMCC3317_01200 (ligA)
DNA repair and recombination proteins [BR:
kan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IMCC3317_01200 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IMCC3317_01200 (ligA)
MMR (mismatch excision repair)
DNA ligase
IMCC3317_01200 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IMCC3317_01200 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Mig-14
HHH
Auto_anti-p27
DNA_ligase_A_M
5_3_exonuc
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QHI34776
UniProt:
A0A7L4ZEW9
LinkDB
All DBs
Position
121994..123991
Genome browser
AA seq
665 aa
AA seq
DB search
MNDIQLQLNALRDELREHNYNYYVLDNPTIEDYDFDMKLKELLALEAKHPEFHDPNSPTL
RVGGTITKNFNTIPHEYRMYSLENSYSKEDLLDWEKRIEKILDVENVEFTCELKYDGASM
NLTYENGKLIKAVTRGDGFQGDEVTNNIKTIKTVPLRLKGDFPPKFDIRGEIILPLDGFK
KMNEERVENGEEPYMNPRNTASGSLKLQDSSEVAKRPLECLLYNIKGENLPISTQFESLE
KARSWGFKVPTVAKVAKNVDEILEFVNYWEANRHELEYEIDGVVIKVNNLQHQEELGYTA
KAPRWAMAYKFKAEQVSTVLNEITYQVGRTGAITPVANLVPVLLAGTTVKRASLHNADQI
ERLDIRERDTVFVEKGGEIIPKIVGVNLELRPSDSTETVYRTTCPECETPLERKEGEAQH
YCPNVSGCTPQIVGRIQHYISRKAMDIEGLGGETVALLVHEGLITNYADLYELTKEQVIP
LERMAEKSAENLVNGIEESKKIPFERVLYALGIRYVGETVAKKLAKHYKSIEALMNASSE
DLVNVDEIGVKIAESVAHYFSEEANLETINRLKQYGVQLEFSAEQLEGLTETLLGKSFVV
SGVFEKVSRNELKKLIENNGGKVSSSISSKTSFVVAGDKMGPSKREKAEKLNITIVTEDE
FLNMI
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatatacaattacaattaaacgctttgcgcgatgaattacgcgaacataattac
aattattatgtattagataatcctacgattgaggattacgactttgacatgaaactcaaa
gaattactagcgttagaagcaaaacatcctgaatttcacgatccaaattcgccaacattg
cgcgttggtggaacgattacgaagaactttaatacgattccgcatgaatatcgcatgtat
tcattggagaattcgtattcgaaagaagatttactcgattgggaaaaacgtattgaaaag
attcttgatgtggaaaatgtggagtttacgtgtgaattaaagtatgatggcgcctccatg
aatttgacatacgaaaatggaaaattgataaaagctgtcacgcgtggcgacggttttcaa
ggagatgaggttacgaataatatcaaaaccatcaaaacggttccgttacgtctaaaagga
gattttcctccaaagtttgatattcgcggcgagattattcttccgcttgacggatttaaa
aaaatgaatgaagaacgtgtcgaaaatggtgaagaaccgtatatgaatccacgaaataca
gcttctggaagcttaaaattacaagatagtagcgaagtggcaaaacgtccgttagaatgt
ttgttatataatataaaaggcgaaaatttgccaatttcaacacagtttgaaagtttagag
aaagctagaagttggggatttaaagtgccaacagtcgcaaaagttgccaagaatgtagat
gaaattttggagtttgtaaattattgggaagccaatcgtcacgaacttgaatatgaaatt
gatggcgttgtgataaaagtcaacaatttgcagcatcaagaagagttaggatatactgct
aaagcaccacgttgggcaatggcgtataagtttaaagcggagcaagtttcgacggtttta
aacgaaattacgtatcaagttgggcgaactggcgccattactcctgtggcaaatttggtt
cctgttttattggctggaacaactgtaaaacgtgcttctttgcataatgcagatcaaata
gagagattggatattagagaacgcgataccgtttttgttgaaaaaggtggcgaaattatt
ccaaaaatagttggtgttaatttggagttacgaccttcagattctaccgaaactgtatat
agaaccacgtgccctgaatgtgaaacgcctttggaacgaaaagaaggcgaagcgcaacat
tattgtccaaatgtttctggttgtacgccacaaattgtcgggagaattcagcattatatt
tcgcgcaaagcaatggatattgaaggtttaggcggcgaaactgttgcgttattagtacat
gaaggtttgattacaaattatgctgatttatacgaattgaccaaagaacaggtaattccg
ctagagcgaatggcagagaaaagtgctgaaaatttggtgaatggaattgaggaatcaaag
aaaattccgtttgaacgtgttttgtacgcgttaggaattagatacgtaggagaaactgta
gctaaaaaattggcaaaacattacaaatctattgaggctttaatgaacgcttcgtcggaa
gatttagtgaacgtcgacgagataggagtgaagatcgccgaaagtgtggcgcattatttc
tcagaagaagctaacttagaaaccattaatcgtttgaagcaatatggagtacaattagag
ttttctgcggaacagttagaaggattgaccgaaactttgttagggaaatcatttgtggtt
tctggagtattcgaaaaagtatcgcgaaacgaacttaaaaaactcatagaaaataatgga
ggaaaagtatcttcttctatatcttctaaaacatcattcgttgttgcaggtgacaaaatg
ggacctagcaaacgcgagaaagcagagaaattaaacataacgatagtaactgaagatgag
tttttgaatatgatataa
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