Kaistella sp. 97-N-M2: L0B70_13130
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Entry
L0B70_13130 CDS
T08605
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kaq
Kaistella sp. 97-N-M2
Pathway
kaq03030
DNA replication
kaq03410
Base excision repair
kaq03420
Nucleotide excision repair
kaq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kaq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L0B70_13130 (ligA)
03410 Base excision repair
L0B70_13130 (ligA)
03420 Nucleotide excision repair
L0B70_13130 (ligA)
03430 Mismatch repair
L0B70_13130 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kaq03032
]
L0B70_13130 (ligA)
03400 DNA repair and recombination proteins [BR:
kaq03400
]
L0B70_13130 (ligA)
Enzymes [BR:
kaq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L0B70_13130 (ligA)
DNA replication proteins [BR:
kaq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L0B70_13130 (ligA)
DNA repair and recombination proteins [BR:
kaq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L0B70_13130 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L0B70_13130 (ligA)
MMR (mismatch excision repair)
DNA ligase
L0B70_13130 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L0B70_13130 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
HHH_3
Dna2
BRCT_2
zf-ribbon_3
Motif
Other DBs
NCBI-ProteinID:
UJF29765
LinkDB
All DBs
Position
2820451..2822454
Genome browser
AA seq
667 aa
AA seq
DB search
MSQDIQQKIQALRAELHQYNYDYYTLDESAVSDFEFDLKLKELHDLEAQHPEFYDSNSPT
LRVGGEITKNFPTVQHQFRMYSLDNSYDFDDLQDWEKRVQRTLNEPVEFVAELKYDGASI
SILYENGVMKEAVTRGDGFRGDEITSNVKTISDIPMQLYGGFPERFFMRGEIYLTRKNFD
KINERREEEGLDLFMNPRNTASGSLKMQDSAEVGKRKLSAVLYQFISTEMPAETHWELLQ
KSREWSFRISDQAKLCKTLDDVKTFINFWDVERHQLPFEIDGIVLKVNSLKQQSQLGYTA
KSPRWAMAYKFKAEKVETELLAVTYQVGRTGAITPVANLKPVLLAGTTVKRASLHNEDII
RKLGLYEHDFVYVEKGGEIIPKIVGVNLEKRNPANREIEYIKNCPECGTELVKIEDQAIH
FCPNDLHCPPQVVGRMIHYVSRKALNIENLGAETIEQLYREKLAENPADFYVLTKEQLLP
LERMAEKSAQNIIAGIEKSKEVPFEKVLFGIGIKHVGETVAKKLAKNFESIEALQNASAE
ELIQVEDIGGKIAESIVAFFQNPENLLMVERLKTYGVQLENGENTNVLLSTALENKTFLF
TGKLSLFTREAAEEMVEKHGGKNISAVSKNLNYLVVGEKAGSKLKKAQDIGTIEILDEQE
FLDLVSN
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaagatattcagcaaaagattcaggccctgcgcgcagaacttcaccaatataat
tacgattactacaccttagacgaatctgccgtttccgatttcgaattcgatctaaaactg
aaagaactgcatgatttagaagcgcagcatccggagttttacgacagcaactctcccact
ttgcgcgtgggcggcgagatcacgaaaaattttcccaccgttcagcaccagtttcgcatg
tactcgctggataattcctacgattttgatgatcttcaagactgggaaaaacgcgtgcaa
agaacgctgaacgaacctgtagaatttgtggccgaactaaaatacgacggcgcttccatt
tctattctttatgaaaacggcgtaatgaaggaagccgtaacacgcggcgacggctttcgc
ggcgacgaaattacctctaacgtgaaaaccatttccgacattccgatgcagctgtacggc
ggttttcccgagcggttttttatgcgcggcgaaatctatctgacgcggaaaaacttcgat
aaaattaacgaacgccgcgaggaagaaggtttggatctctttatgaatccgcggaataca
gcctccggaagtttaaaaatgcaggattccgcagaggtagggaaaagaaaactttctgcc
gttctgtatcagtttatttccaccgaaatgcctgcagagacgcattgggaactcctgcaa
aaaagccgtgaatggagttttcgcatctctgaccaggcaaaactttgcaaaacgttggac
gacgttaaaaccttcattaatttttgggatgtagaaagacatcagctgcccttcgaaatt
gatggaatcgttttaaaagtgaactccttaaaacagcaatcccagttaggatacaccgcc
aaatcgccgcgttgggcaatggcctataaatttaaagctgaaaaagtggaaactgaattg
ctggccgtgacttatcaggtcggcagaaccggtgccatcacgccggtggccaatttaaaa
cctgttctgcttgccggaacaacggttaagcgcgcgagtctgcataacgaagatatcatc
cgaaaactcggcttgtacgaacatgacttcgtttatgtagaaaaaggcggcgaaattatt
ccaaagatcgttggtgttaatttagagaaacgaaatcccgcaaatcgtgaaatcgagtac
attaaaaactgtccggaatgtgggactgagctggtgaaaatcgaagatcaggcgattcat
ttttgtccgaatgatctgcattgtccgccgcaggttgtgggccgaatgattcattacgtt
tcgcgcaaagctttaaatattgaaaatttaggcgcagaaaccatcgaacagctgtaccgc
gaaaagttggcggaaaatcctgcagacttttacgttttaacgaaagaacaacttctgccc
ctggaaagaatggcggaaaaatctgcgcagaacatcattgctggaatcgagaaatccaaa
gaagttccgtttgaaaaagtgttgtttggaattggcatcaagcacgtcggcgaaacggtg
gcgaaaaaacttgcaaaaaatttcgaatcgattgaagctttacaaaacgccagcgcagaa
gaactcattcaggtggaagatattggtggaaaaatcgcagaaagtattgtggctttcttt
caaaatccggaaaatctgctgatggttgagcggctgaaaacgtacggcgttcaactggaa
aacggtgaaaacacgaatgtgcttttaagtacggctttggaaaataaaacgtttcttttc
accggaaaactgtctctgtttacgcgcgaagccgcggaagaaatggtggaaaaacatggc
ggaaaaaacatttcggcggtttcgaaaaacctgaactatctcgtagttggcgaaaaagcc
ggcagcaaactgaaaaaagcgcaggacatcggcacaattgaaatcctggatgagcaggag
tttttagatttagtttcaaattaa
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