Klebsiella africana: LGL98_00560
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Entry
LGL98_00560 CDS
T07696
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kar
Klebsiella africana
Pathway
kar03030
DNA replication
kar03410
Base excision repair
kar03420
Nucleotide excision repair
kar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LGL98_00560 (ligB)
03410 Base excision repair
LGL98_00560 (ligB)
03420 Nucleotide excision repair
LGL98_00560 (ligB)
03430 Mismatch repair
LGL98_00560 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kar03032
]
LGL98_00560 (ligB)
03400 DNA repair and recombination proteins [BR:
kar03400
]
LGL98_00560 (ligB)
Enzymes [BR:
kar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LGL98_00560 (ligB)
DNA replication proteins [BR:
kar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LGL98_00560 (ligB)
DNA repair and recombination proteins [BR:
kar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LGL98_00560 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LGL98_00560 (ligB)
MMR (mismatch excision repair)
DNA ligase
LGL98_00560 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LGL98_00560 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
HHH
HHH_5
RNA_ligase
Nlig-Ia
DUF3701
Motif
Other DBs
NCBI-ProteinID:
UDD40490
LinkDB
All DBs
Position
114549..116225
Genome browser
AA seq
558 aa
AA seq
DB search
MRKGGWWLALGMFSASALATCPDWPPAKGRQEISRLHQQIVAWKEAYWRQGASEVSDDVY
DQLSLRLAQWRHCFPGATPEDDDLPPPTGDTRHPVAHTGVRKLADEASVARWMKNKTDLW
IQPKVDGVAVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALAKVTTGELANSVLQGE
LFLRRDGHVQQQAGGMNARAKVAGLMMRADAAAALSQLDVFIWAWPDGPSDMRRRQAMLT
QAGFKYSGQYTYPVTRVEQVAQWRQRWYRSPLPFVSDGVIVREGREPPGRVWSPGKGEWL
AAWKYPPASRVMEVRAIHFSTGRSGRLNVVAQLEPLRLDDKRVQRVNVGSVSRWLALDIG
VGDQLQISLAGQGIPRIDAVVWRTAERHKPAPPAAKFNALSCYFATPECSEQFLSRLIWL
SSKSALDVDGVGENLWRAIQQQNPMTHIFSWLALTVEQLQAVPGISAARGQHLWHQFDLV
RKRPFIRWVLAMGLPVPQGALAQLESENWHRLAAKSEAQWRALPGVGEIRARQLVAFLHH
PDVVALAQWLSGQRIPGF
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaaggagggtggtggctggcgctagggatgttctctgccagcgcgctggcgacg
tgtccggactggccgccggccaaaggaaggcaagagatttcacgccttcatcagcaaatt
gtcgcctggaaagaggcctactggcgtcagggcgccagtgaggtgagcgatgacgtttac
gaccagctcagcctgcgtcttgcgcaatggcggcactgttttccgggcgcaacgcctgaa
gatgacgatctgcctccgccgacgggggatacgcgtcacccggtggcccataccggtgtg
cgcaagctggcggatgaggccagcgttgcccgctggatgaaaaataaaaccgacctgtgg
atacagcctaaagtggacggcgtggcggtcacgctagtctatcggcaggggcgtctggtt
caggccattagccgcggcgatggtctgcgcggtgaggcatggaccgcccgagcgcggcag
atcccagcgctggcgaaagtgacgaccggtgaactggccaacagcgtgctgcagggggag
ctgtttctgcgccgggacggccatgttcagcagcaggctggagggatgaacgcgcgggcg
aaagtcgccgggttgatgatgcgagccgacgcggcggctgcgcttagccaactggacgtt
tttatctgggcctggccagacggcccgtcggatatgcgccgtcggcaggcaatgctgacg
caggcggggtttaagtacagcgggcaatatacctacccggtgacacgcgtcgagcaggtg
gcgcagtggcgccagcgctggtatcgctcaccgctgcccttcgtgagcgacggtgtgatt
gtgcgcgaaggtcgtgagccgccgggtcgagtctggtcgcccggaaagggagaatggctg
gcagcctggaaatatcctccggcatcgcgggtgatggaggtgcgggcgatccatttcagt
accggccgcagcggcagactcaacgtggtggcccagcttgaaccccttcggctggatgac
aaacgggtgcagcgggttaacgttggctctgtatcccgctggctggcgctggatattgga
gttggcgatcagctgcagatcagtctggcggggcagggtattcctcggatcgacgccgtc
gtctggcggacggccgagcgccataaaccggcgccgccggcggctaaattcaatgcgcta
agctgctatttcgccacccctgagtgcagcgaacagtttctttcccggctgatctggctg
tcatcaaagtccgcgctggatgtcgatggcgtgggggaaaatttatggcgcgccattcag
cagcaaaacccgatgacccatattttttcctggctggcgcttacggtggagcagctgcag
gcggtgccagggatctccgccgcccgcgggcagcacctctggcatcaatttgatctcgtt
cgcaaacggccttttatccgctgggtgctggcgatggggctcccggtacctcagggggcg
ctggctcagctcgaaagcgagaactggcatcggctggcggcaaaaagtgaagcgcaatgg
cgcgcgctgccgggcgtgggggagatcagagcccgccagctggtggctttcctgcatcac
ccggacgtggtggcgctggcgcaatggcttagtgggcagcgcatccccgggttttga
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