Ktedonobacteria bacterium brp13: ccbrp13_58620
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Entry
ccbrp13_58620 CDS
T09592
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kbb
Ktedonobacteria bacterium brp13
Pathway
kbb03030
DNA replication
kbb03410
Base excision repair
kbb03420
Nucleotide excision repair
kbb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ccbrp13_58620 (ligA)
03410 Base excision repair
ccbrp13_58620 (ligA)
03420 Nucleotide excision repair
ccbrp13_58620 (ligA)
03430 Mismatch repair
ccbrp13_58620 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kbb03032
]
ccbrp13_58620 (ligA)
03400 DNA repair and recombination proteins [BR:
kbb03400
]
ccbrp13_58620 (ligA)
Enzymes [BR:
kbb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ccbrp13_58620 (ligA)
DNA replication proteins [BR:
kbb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ccbrp13_58620 (ligA)
DNA repair and recombination proteins [BR:
kbb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ccbrp13_58620 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ccbrp13_58620 (ligA)
MMR (mismatch excision repair)
DNA ligase
ccbrp13_58620 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ccbrp13_58620 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_ligase
BRCT_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
BCL83397
UniProt:
A0A7I8EW97
LinkDB
All DBs
Position
complement(7232009..7234120)
Genome browser
AA seq
703 aa
AA seq
DB search
MSDVQSGQTEQSKSKHTANDLLEQVTSDEGNDEERLEIRVAELRHQIEEANYHYYVQDNP
VLTDAEYDQYMIELQRIEQEHPELQTPDSPTQRVGAQPIQDVPQQRHPLPMLSLANARSE
QELQDWQRRAQNILPNATFSYVCELKIDGLAMALTYDEGRLMIGATRGDGLVGENWTQNI
RTIRTIPQKLRGDQIPPKVEVRGEIYMPIRDFERINAEMTDTSHLFANPRNAAAGSLRQK
DSRVTATRRLSFFGYQIGYVDGMRITSHWDTLQLIRAWGFPVNPHIQMAHNLDEVMDYCQ
KWEKERFNLPYEIDGVVIKINDLAHQEELGTVARDPRWAIAFKYPPIQVATRLQDIRINI
GRTGSVNPYAVLDPITIRGVTVSRAALHNEGDIQRKDLRIGDWVLVQRAGEVIPQVVKPV
LERRTGNEEIYHLPDHCPYCGTAIERLEDQAMAYCPNKQCPERILQGVIHFVSKGAMDME
TIGEKMSEQLVKAGYIKTLSDFYQLTEEQLLALEGVKKRSADTMLKSIETSKHRALWRLL
FGLNIRYIGEKSAQIIASAFLSIDRLEQASAEEITAVPGIGPEIGQSVYNWFQDADNLAL
IERLRQAGLNMEEIVTEQTGPLTGQSFLLTGRLTSMTRSSAEEDIKRLGGKIATGVSKTL
SHLVVGEDPGSKLAKAQKAGVAIHDEQWLIDLLQELNQQELNQ
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgtacagagtgggcaaaccgagcaaagcaagtcaaagcatacagcaaacgac
ctgctagagcaggttacaagcgatgagggcaacgatgaagagcgtcttgagatacgtgta
gccgagctcagacaccagattgaagaggcgaattatcactattacgtccaggacaatcca
gtgctaaccgacgcagaatacgatcagtatatgatcgaactgcaacgtatcgaacaagag
catccagagttacagactccagattcgcccactcagcgtgtaggggcacaaccgatacag
gatgttccccaacagcgacatcctttgcctatgttaagtctggcaaatgcccgtagtgaa
caggagctacaagactggcagcgtagagctcaaaacatcctaccgaatgccacctttagc
tatgtatgtgaattgaagatcgatggtctggcaatggctctcacgtacgacgaggggcga
ctcatgatcggagcgacccgtggcgatggtctggtcggcgaaaactggacgcagaatata
cgtacgatccgcactatcccacaaaaactgcgtggtgaccagatccctcctaaggttgag
gtacgcggcgagatttatatgcctattagagacttcgagcgtatcaatgcagagatgacc
gatacaagccacctgtttgcgaatccccgcaacgcagccgcaggttcactacgccagaaa
gactcgcgtgtcaccgctacgcgccgcctctcattctttggctaccagatcggctacgtg
gatggcatgcgtatcaccagtcattgggataccttacaactgattcgcgcatggggcttt
cccgtcaatccccatattcagatggcccacaacctggacgaagtgatggactattgccag
aaatgggaaaaagagcgcttcaatctcccctatgagattgatggtgtcgtcatcaaaatc
aacgatctcgcgcaccaggaagagctagggaccgtcgcgcgtgacccacgctgggcgatc
gcatttaaatatccacctatccaggtcgctaccagattacaagatatccgtatcaatatc
ggccgcaccggctcggtcaacccttatgcggtactcgacccgattacgattcgtggcgtc
acggtctcgcgcgcagctctacataatgagggcgatatccaacgcaaagacctgcgtatc
ggcgactgggttctggtacaacgcgctggcgaggtcattcctcaggtcgtcaaaccggtc
cttgagcgacgtactggcaacgaagagatctatcatctccccgatcactgcccctactgt
ggcacagcaatcgagcgcctcgaagatcaagcaatggcctactgtcccaacaaacaatgc
cccgaacgcattctacagggcgtcatccacttcgtatccaaaggcgcaatggatatggag
accattggggaaaagatgagcgaacagctcgtcaaagcgggctatatcaagaccctttcc
gatttctatcaactgaccgaagaacagttgttagcactggaaggggtgaagaagagaagc
gcagatactatgcttaagtcgatcgaaaccagcaagcaccgcgcgttatggcgactcctc
ttcggcttaaatatccgctatatcggcgaaaaatcggcccagatcattgcctctgccttc
cttagtatcgatcgtttagagcaggcaagcgccgaggagatcaccgccgtcccaggcatc
ggtccagagatcgggcagagcgtatataactggttccaggatgccgacaatctggcattg
atcgaacgcctgcgccaggctggcctgaatatggaagagatcgtcaccgaacagacagga
cccttaaccggtcaatccttcctgctcacaggacgtctcaccagcatgacgcgcagctca
gccgaagaagatattaagcgtctgggtggcaagatcgcaaccggtgtcagcaaaacgctc
agccaccttgtcgtcggcgaagatcccggttcaaagcttgccaaagcacagaaagccggc
gtcgctattcacgacgaacaatggctgattgaccttcttcaggaactcaaccagcaggaa
ctcaaccagtga
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