Candidatus Kinetoplastidibacterium blastocrithidiae (ex Strigomonas culicis): CKBE_00597
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Entry
CKBE_00597 CDS
T02427
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kbl
Candidatus Kinetoplastidibacterium blastocrithidiae (ex Strigomonas culicis)
Pathway
kbl03030
DNA replication
kbl03410
Base excision repair
kbl03420
Nucleotide excision repair
kbl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kbl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CKBE_00597 (ligA)
03410 Base excision repair
CKBE_00597 (ligA)
03420 Nucleotide excision repair
CKBE_00597 (ligA)
03430 Mismatch repair
CKBE_00597 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kbl03032
]
CKBE_00597 (ligA)
03400 DNA repair and recombination proteins [BR:
kbl03400
]
CKBE_00597 (ligA)
Enzymes [BR:
kbl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CKBE_00597 (ligA)
DNA replication proteins [BR:
kbl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CKBE_00597 (ligA)
DNA repair and recombination proteins [BR:
kbl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CKBE_00597 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CKBE_00597 (ligA)
MMR (mismatch excision repair)
DNA ligase
CKBE_00597 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CKBE_00597 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
BRCT_2
HHH
DNA_ligase_ZBD
5_3_exonuc
RNA_pol_A_CTD
Zn_ribbon_PADR1
Motif
Other DBs
NCBI-ProteinID:
AFZ83786
LinkDB
All DBs
Position
complement(664214..666151)
Genome browser
AA seq
645 aa
AA seq
DB search
MNELLNLESMYPNLITEYSPTQRVGSTPLESFNKIEHSIPMLSLSNAFTSEDVELFNKRV
ISSLLKKIDLRDDVEYFCDLKLDGLAINLRYENGILVHGSTRGDGYIGEDVTANIRVIRS
IPLRLIGDFPKILDVRGEVLMYNVDFENLNNYNIRNGGRVFVNPRNAAAGSLRNLDSKVS
SMRKLRFFAYGWGKIIDDQSAPNKLFKCQYKTHDSVLDWFISLGLPVNKRYHKVVSGISG
ILDYYNSIVNDRDSLPYGIDGVVYKVNSLDRQEMLGYSSRAPKFALAHKFLAEEAVTQII
GIDVQVGRTGVITPVARLKPIFVGGVTISNATLHNEHEIRRKDIRIGDFVVIRRAGDVIP
EVVYPIIDLRPVNTTPFHMVVSCPICSSSIKRIDNEIAYRCTGGLYCSAQLKQGLKHALS
RKAFNIVGFGEKLIDKLVDLGYLKSLVDVFRLSCSDLMKVELVAEKSATNLLRAINNARK
PSLSNFIFAMGIRHVGEATAIDIANNFNTLESIIQASIDDLLSVKDVGSKTAESIRLFFS
EEHNIGIINSLKSIGVYPLSDEYYKSNNLKLLEGKLFAITGRLPDYSREDIVKHIEDNGG
RVTSNISKKNHYLIAGESSGKKLDFAIDNGIKVIDQKAFMKLIDL
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagttattaaatctagaatccatgtaccctaatttaataacagaatattctcct
acacagagggtaggatccactcctcttgagtcatttaataaaattgagcattcaatacct
atgttatctctttccaatgcatttacatcagaagatgttgaattgtttaataaaagagta
atttcctcgttacttaagaaaattgatcttagagatgatgttgagtatttttgtgatttg
aagctagatggccttgctataaaccttagatacgaaaatggtattttagttcatggatct
acccgtggtgatggttatattggtgaagatgttactgctaatatacgtgttataagatct
attccattaagattaattggagattttcctaagatattggatgtaaggggagaagtacta
atgtacaatgtggatttcgaaaatctcaacaactataatataagaaatggaggaagagtt
tttgtaaaccctcgcaatgctgctgctggaagcttgagaaatcttgattcaaaggtcagt
tctatgcgtaaattaagattttttgcttatggatggggcaaaattattgatgatcaatct
gcgcctaataaattatttaaatgtcagtataaaactcatgattcagtacttgattggttt
atttcattaggattgcctgttaataaaagataccataaggttgtatcaggaattagtggt
atattggactattataactcaatagttaatgaccgtgattctttgccatatggtatagat
ggtgtagtttataaagtaaattctttggataggcaagagatgcttggatactcatccaga
gctccgaagtttgctctggctcataagtttttggcagaagaggcagttacacagattatt
ggtatagatgttcaggtaggaagaactggtgtcataactcctgtagctcgtttaaagcct
atttttgttggtggagttactatttctaatgctacattacacaatgaacacgaaataaga
cgcaaagatatacgcataggagattttgttgtaattagaagagctggtgatgtgatacca
gaagttgtttatccaattatagatttgagacctgttaatacaacaccatttcatatggtt
gttagttgtcctatttgtagttcttcaattaaacgcattgataatgagattgcgtatcgt
tgtactggtggtttatattgctccgctcaattaaaacaaggattaaagcacgctctaagt
cgcaaggcatttaatatagttggttttggagaaaaacttattgacaaattggttgatttg
ggatacttaaaatctttggttgatgtttttagattatcatgttctgatttgatgaaggta
gaattagtagctgagaaatcagctactaatttattaagagctattaataatgcacgtaaa
cctagtctgagtaatttcatatttgctatgggaataagacatgtgggcgaggcaacagct
attgatatagctaataattttaatactcttgagagtattattcaggctagtattgatgat
ttgctatcagttaaggatgttggatctaagacagctgaatccataaggttgtttttttct
gaagaacacaatataggcataataaattctttaaagtctataggtgtttatcctttatct
gatgaatattacaaatcaaataatctaaaactattagaaggtaaattatttgctataaca
ggtagattgccagactattctagagaagatattgtaaaacatatagaggataatggaggt
agagttacaagcaacatatctaaaaaaaatcattatttaattgctggtgagagttctggc
aagaagttagattttgcgatagataatggaataaaagtaatagatcaaaaagcatttatg
aagctaattgatctatag
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