Candidatus Kaiserbacteria bacterium NC_groundwater_79_Ag_B-0.1um_58_26: HYS26_01590
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Entry
HYS26_01590 CDS
T09896
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kbn
Candidatus Kaiserbacteria bacterium NC_groundwater_79_Ag_B-0.1um_58_26
Pathway
kbn03030
DNA replication
kbn03410
Base excision repair
kbn03420
Nucleotide excision repair
kbn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kbn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HYS26_01590 (ligA)
03410 Base excision repair
HYS26_01590 (ligA)
03420 Nucleotide excision repair
HYS26_01590 (ligA)
03430 Mismatch repair
HYS26_01590 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kbn03032
]
HYS26_01590 (ligA)
03400 DNA repair and recombination proteins [BR:
kbn03400
]
HYS26_01590 (ligA)
Enzymes [BR:
kbn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HYS26_01590 (ligA)
DNA replication proteins [BR:
kbn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HYS26_01590 (ligA)
DNA repair and recombination proteins [BR:
kbn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HYS26_01590 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HYS26_01590 (ligA)
MMR (mismatch excision repair)
DNA ligase
HYS26_01590 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HYS26_01590 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
HHH_3
DNA_ligase_ZBD
HHH_8
Nlig-Ia
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QQG38229
UniProt:
A0A7T5R6B3
LinkDB
All DBs
Position
275422..277440
Genome browser
AA seq
672 aa
AA seq
DB search
MSEIPAETRGRYEKLKSTINRYRTLYHVYDKEGISQAALDSLKHELTEIETRYPKIIAPD
SPSQRVAGKPLPQFKKVRHSVPQWSFNDAFTEEEIREFDARTKRFLRAKFGDTAPTYVCE
LKIDGLKVVLTYEKGLLKTAATRGDGVVGEDVTHNIKTIESVPLSLPRQIDAVVEGEVWM
SAASLETLNRVRRKAGQPLFANPRNAAAGSIRQLDPKIAAERNLDVFIYDVAQSSEKIPQ
TQEEELVYLQELGFKVNHHKKTFKTVDGVIDFWNEWQKKGRHQQYWVDGIVVKVNERDFQ
EALGYTGKAPRFAIAFKFPAEQVTTVLEDIVLQVGRTGVLTPVAHLKPVQVAGTIVSRAT
LHNEDEITRLDVRVGDTVILQKAGDVIPDIVQVVKELRPKGAKPYAWPTHVPECGGDGRI
ERVPGTAAWRCVNKNSFAVIRRRFHNFVGKHALDIEGLGKERVDQLLEEGLVQHYDEIFS
LKEGDLLRLEGYAPVSAKKLVDAIQKARSVDLARLLTGLSIPQVGEETATLLAKHYRTID
EIAKASAEDLEHIEGVGPIVAREITEWFALKRHHTLLKNLKDVLTISNTLHAHKSAGKLS
GKTYVLTGTLSSMSRDEAKEKLRLLGADVSGSVSKKTTAVIAGENAGSKLDKAKELGVPV
LTEEAFVRMIGR
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagattccggccgagactcgcgggcgctacgagaaactgaagtcgacgatcaac
cgctaccgtaccctctaccacgtctacgataaagaggggatttcgcaggctgcgctggat
tccctgaagcacgagctcacggagattgagacgcggtatccaaaaataatcgcgcccgat
tctccctcgcagcgggtggccgggaagcccttgccgcaattcaagaaggttcggcacagc
gtgccgcagtggtcgttcaacgacgcctttaccgaggaagagatacgggagttcgacgcg
cgcacgaaacgattcctccgggcgaaatttggcgacacggcaccgacgtacgtgtgcgag
ctgaaaatcgacggcctcaaggtggtgctcacgtacgaaaagggtcttttgaaaacagcg
gcgacccgcggcgacggagtcgtgggggaggacgtgacgcacaacataaagacgatcgaa
tccgtgccgctctcactgccgaggcagatcgatgcggtggtggagggcgaggtgtggatg
agcgcggcatcgctcgaaacactgaatcgcgtgcgaagaaaggcggggcagccgctcttt
gcgaatccgcgcaacgcggcggccggctcgatccggcagctcgatccgaaaattgctgcc
gagcgtaatctcgatgttttcatctacgacgtcgcccaaagttcggagaagataccgcag
acgcaggaagaagagctcgtttacttgcaggagcttggcttcaaagtgaatcaccacaaa
aaaacctttaaaacggtcgacggcgtgatcgacttttggaatgagtggcaaaaaaagggg
cggcaccagcagtattgggtcgacgggatcgtcgtgaaggtcaacgagcgtgatttccag
gaagcgctcgggtacaccggaaaagccccgcgttttgcgatcgctttcaagtttccggcg
gagcaggtgaccaccgtgctcgaagacatcgtgctccaggtggggcgcacgggcgtcctc
acgccggtcgcgcacttgaaaccggtgcaggtggccgggacgatcgtgagccgtgccacg
ctgcacaacgaagatgagatcacgcggctcgacgtgcgtgtcggcgatacggtgattttg
cagaaggcgggtgatgtgattcccgacatcgtgcaggttgtgaaggagttgcgccccaag
ggcgcaaagccttacgcgtggcccacacacgtgccggagtgcggcggcgacggccgcatc
gagcgcgtccccggcaccgccgcgtggcgctgcgtcaataaaaattcgtttgcggtgatt
cgccgccgcttccacaattttgtggggaagcacgcactcgacatcgaagggctcgggaaa
gagcgggtcgatcagctgctcgaagaggggctggtgcagcactatgacgaaatcttttcg
ctgaaggaaggcgatctcttgcggctcgaagggtatgctccggtctcggccaaaaagctt
gtcgacgcgattcaaaaagcgcgcagcgtggatctcgcgcgcctccttaccggtctttcg
ataccgcaggtgggggaggaaacggcgactctgctcgcgaagcactaccgcacgatcgac
gagatcgcgaaagcctctgccgaggatctcgaacacatagaaggagtcgggccgatcgtc
gcccgcgagattaccgagtggtttgcgctgaagcggcatcacacgctcctgaagaatctg
aaagacgtccttaccatttccaacacactgcacgcacacaagtccgcagggaaactgtcc
ggcaaaacgtacgtactcaccggcactcttagctcgatgtcgcgcgatgaggccaaggag
aagctgcgcctcctcggggccgatgtctccgggtcggtctccaaaaaaacgaccgcagtc
atcgcaggcgaaaacgccggctccaagcttgataaagcaaaggagctgggagtccctgtg
ctgacagaggaagcgtttgtgcgtatgataggccgatga
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