Kutzneria buriramensis: Q4V65_32705
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Entry
Q4V65_32705 CDS
T10787
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kbr Kutzneria buriramensis
Pathway
kbr03030
DNA replication
kbr03410
Base excision repair
kbr03420
Nucleotide excision repair
kbr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q4V65_32705 (ligA)
03410 Base excision repair
Q4V65_32705 (ligA)
03420 Nucleotide excision repair
Q4V65_32705 (ligA)
03430 Mismatch repair
Q4V65_32705 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kbr03032
]
Q4V65_32705 (ligA)
03400 DNA repair and recombination proteins [BR:
kbr03400
]
Q4V65_32705 (ligA)
Enzymes [BR:
kbr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Q4V65_32705 (ligA)
DNA replication proteins [BR:
kbr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Q4V65_32705 (ligA)
DNA repair and recombination proteins [BR:
kbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Q4V65_32705 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q4V65_32705 (ligA)
MMR (mismatch excision repair)
DNA ligase
Q4V65_32705 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Q4V65_32705 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
XIF79503
LinkDB
All DBs
Position
6970190..6972316
Genome browser
AA seq
708 aa
AA seq
DB search
MTSTEEVPDDVRAHYGELAEQIRGHQFRYYVLDSPTVTDGEFDEQLRELQAIEDKYPSLV
TPDSPTQRVGGTFSTDFTAVDHLERLLSLDNVFNLEDLRAWADRVHKEIGEDSHFLCELK
IDGLALNLLYEDGRLVRALTRGDGRTGEDVTLNVRTIGDIPERLTGTDEFPKPRLVEVRG
EVFFRVEDFEELNAGLVAAGKPPFANPRNSAAGSLRQKDPKVTASRPLRFICHGLGKREG
FEPQRQSDAYRALAAWGLPVSPHTKLVKGMGEVEAHVEYWGEHRHDAVHEIDGVVIKVDE
VALQRRLGSTSRAPRWAIAYKYAPEEATTTLLDIQVGVGRTGRVTPFAVTKPVLVAGSTV
ARATLHNASEVKRKGVLIGDTIVIRKAGDVIPEVLGPVVDARMGNEREFVMPVDCPECGT
TLRYEKEGDADIRCPNQQSCPAQLRERLFYLASRRALDIEVLGYEAATALLEAGVIEDEG
DVFDLDEEKLLRTELFRAQDKKSELGYKLSANGERLLANLDAAKDRELWRVLVSLSIRHV
GPSAARALAVTFGSIDRIFAASEEELAAADGVGPTIAAAVLEWHEWEWRRDIIEKWRAAG
VRMEEEQDAATPRVLDGLSIVVTGTLPNFSRDEAKEAIIVRGGKAVGSVSKKTSFVVVGE
NPGSKHDKAIQLKVPVLDEDGFRVLLAQGPDAAAEVATVGAEEESADE
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
gtgaccagcaccgaagaggttcccgacgacgttcgcgcgcactacggggagctcgccgag
cagatccgcgggcaccagttccgctactacgtcctggactcgccgacggtcaccgacggc
gagttcgacgagcagctgcgggagttgcaggcgatcgaggacaagtacccgagcctggtc
acgcccgactcgccgacgcagcgggtcggcggcacgttctccaccgacttcaccgcggtc
gaccaccttgagcggttgctcagcctggacaacgtcttcaacctggaggacctgcgcgcc
tgggccgaccgcgtgcacaaggagatcggcgaggactcgcacttcctgtgcgagctgaag
atcgacggcctcgcgctgaacctgctctacgaggacggaaggctggtccgggcgctgacc
cgcggcgacggtcgcaccggcgaggacgtcacgctgaacgtccgcaccattggcgacatc
ccggagcgactgaccggcaccgacgagttccccaagcccaggctggtcgaggtgcgcggc
gaggtgttcttccgggtggaggacttcgaggagctcaacgccggcctggtcgcggcgggc
aagcctccgttcgccaacccgcgcaactcggcggcgggctcgctgcggcagaaggacccg
aaggtcaccgcgagccgtccgctccgcttcatctgccacggcctcggcaagcgcgagggc
ttcgagccgcagcgccagtccgacgcctaccgcgcgctggccgcgtggggcctcccggtg
tccccgcacaccaagctggtcaagggcatgggcgaggtcgaggcgcacgtcgagtactgg
ggcgagcaccggcacgacgccgtgcacgagatcgacggcgtggtgatcaaggtcgacgag
gtggcgctccagcgccggctcggctccacgtcccgggccccgcgctgggcgatcgcgtac
aagtacgcgcccgaggaggccaccaccacgctgctggacatccaggtcggcgtcggccgg
accggccgcgtgacgccgttcgcggtgaccaagccggtgctggtggccggttccacggtg
gcgcgggcgacgctgcacaacgcgtccgaggtcaagcgcaagggcgtgctgatcggcgac
acgatcgtcatccgcaaggccggcgacgtgatcccggaggtgctcggcccggtggtcgac
gcccgcatgggcaacgagcgcgagttcgtgatgccggtggactgcccggagtgcggcacc
acgctgcgctacgagaaggagggcgacgccgacatccgctgccccaaccagcagtcctgc
ccggcgcagctgcgggagcggctgttctacctggccagccgccgggcgctggacatcgag
gtgctcggctacgaggcggcgaccgcgctgctggaggccggcgtcatcgaggacgagggc
gacgtgttcgacctcgacgaggagaagttgctgcgcacggagctgttccgggcccaggac
aagaagtccgagctgggctacaagctgtccgccaacggcgagcggctgctggccaacctg
gacgcggccaaggaccgggaactctggcgcgtgctggtgtcgctgtcgatccggcacgtc
gggccgtcggcggcgcgggcgctggccgtgacgttcggctccatcgaccggatcttcgcc
gccagcgaggaggaactggccgcggccgacggcgtcgggccgaccatcgcggcggccgtc
ctggagtggcacgagtgggagtggcgccgggacatcatcgagaagtggcgcgccgccggc
gttcggatggaggaggagcaggacgccgccacgccgcgggtgttggacgggctgtccatc
gtggtcaccgggacgctgccgaacttctcccgtgacgaggccaaggaggcgatcatcgtg
cgcggcggcaaggccgtcggctcggtgtccaagaagacctcgttcgtggtggtcggcgag
aacccgggttccaagcacgacaaggcgatccagctcaaggtgccggtgctggacgaggac
ggcttccgggtgctgctggcgcaggggccggacgcggcggccgaggtcgccaccgtcggc
gccgaggaggagtcagcggacgaatag
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