Ktedonosporobacter rubrisoli: EPA93_20845
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Entry
EPA93_20845 CDS
T05969
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kbs
Ktedonosporobacter rubrisoli
Pathway
kbs03030
DNA replication
kbs03410
Base excision repair
kbs03420
Nucleotide excision repair
kbs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EPA93_20845 (ligA)
03410 Base excision repair
EPA93_20845 (ligA)
03420 Nucleotide excision repair
EPA93_20845 (ligA)
03430 Mismatch repair
EPA93_20845 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kbs03032
]
EPA93_20845 (ligA)
03400 DNA repair and recombination proteins [BR:
kbs03400
]
EPA93_20845 (ligA)
Enzymes [BR:
kbs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EPA93_20845 (ligA)
DNA replication proteins [BR:
kbs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EPA93_20845 (ligA)
DNA repair and recombination proteins [BR:
kbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EPA93_20845 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EPA93_20845 (ligA)
MMR (mismatch excision repair)
DNA ligase
EPA93_20845 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EPA93_20845 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
BRCT_2
Auto_anti-p27
Zn_ribbon_NUD
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
QBD78313
UniProt:
A0A4P6JSQ9
LinkDB
All DBs
Position
4764255..4766333
Genome browser
AA seq
692 aa
AA seq
DB search
MSDAVPENNQSQSGTPETLVQAGKSEEEQLAARVATLRHQIEEANYHYYVQDNPTLSDAE
YDQLMIELQHIEQEHPELQTPDSPTQRVGAPVQDVTQHRHPVPMLSLANARSEKELQDWH
RRAQNILPNAQFSYVCELKIDGLAIALTYEQGRLTIGATRGDGMVGENWTPNIRTIRQIP
QRLRGEHIPAKVEVRGEIYMSIASFEKLNAEISDGKLFANPRNAAAGSLRQKDSRITASR
HLDFFGYQLGYIEGMNVSSQWEALQLIREWGFPVNPNIKQANSLDEVIEYCNKWEQERFN
LPYEIDGVVIKINNLAQQEELGTVARDPRWAIAFKYPPTQVATKLLDIRVNIGRTGSVNP
WAMLEPMNIRGVTVSRAALHNEEDIQRKDLRIGDWVLVQRAGEVIPQVVKPIEERRTGQE
EVYRLPENCPRCGTPIVRVTDQAMAYCPNPQCPARNFESITHFVSKGAMDMDTIGEKTCE
QLIEAGYIQNVADFYTLTRDQLLALEGIKAKSADNMLTAIEASKQRALSRLLFGLNIRYM
GEKTAQIIAGAFGNMDRLLAASETEIVKIPGIGPKIGHSVYCWLQEPANRALIERLRGVG
VNMTEEQHSISGPLSGQSFLLTGRLSQMTRTAAEDAIKGLGGTIASGVSKSLNHLIVGED
AGSKLTKAQKAGVPIHDEEWLIDLLKEHVTAE
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgcagtccccgagaacaaccagagccagagcggcacaccagaaacgctggtc
caagctggcaaaagtgaggaagagcaactcgccgcgcgtgtcgcgaccctgcgccatcag
attgaagaggccaattaccactactatgttcaggataacccaacgctcagcgatgctgaa
tacgatcagttgatgattgagctccaacacatagagcaagagcatccggaactgcagacc
ccagattcgcctacccagcgtgtaggcgcgcccgtgcaggacgttacccagcacaggcac
ccggtccctatgctcagcctggccaatgcccgcagcgaaaaagagctgcaggactggcac
agaagagcacagaatattttacctaacgctcagttttcctatgtttgtgagctaaaaatt
gatggtcttgccatcgctttaacctatgagcaaggtcgcctgactatcggcgcaacccgt
ggcgacggcatggtcggcgaaaactggacaccaaatatacgcacgattcgccagattccg
cagcggttgcgcggcgagcacatcccggcgaaagtcgaggtgcggggcgaaatctatatg
tccatagcaagctttgagaagctcaatgcagaaatcagcgacggaaagctttttgccaat
cctcgtaacgctgccgccggctcgctgcgccagaaagattcacgtatcacggcctcacgt
cacctcgatttctttggttatcagcttggctacatcgagggcatgaatgtaagcagtcag
tgggaagcgctacaattgatccgtgaatggggttttccggtcaatcctaatatcaagcag
gccaactcactggatgaggttattgagtactgcaacaagtgggagcaagagcgcttcaat
ctgccttatgagattgacggcgtggtgattaagatcaacaatctggcccagcaggaagaa
ttgggtacagtggcccgcgatccccgctgggctatcgcctttaagtatccgcctacccag
gtcgccacaaagctgttggatatccgtgtcaacattggacgtacaggttcggtcaatccc
tgggccatgcttgaacctatgaatattcgtggcgtcacggtctcacgggccgcgcttcac
aatgaagaagatatccagcgtaaggatctgcgcattggagactgggttctcgtgcagaga
gccggcgaagttatcccgcaggtagtcaagcctatcgaggagaggcgcacaggtcaggaa
gaggtctatcgcctgcccgagaattgcccgcgctgcggcacacctatcgttcgtgtcacg
gatcaggcgatggcttactgtcctaatccacaatgtccggcgcgcaactttgagagtatt
acccactttgtctctaaaggcgccatggatatggacaccatcggcgagaagacttgcgag
cagttgattgaggctggctacattcagaacgttgccgacttttatacgcttacccgcgat
caactcctggctctggaggggatcaaggctaaaagcgctgataatatgctcacagccatc
gaagccagcaaacagcgcgcgctctccaggttgctctttggcctgaatattcgctatatg
ggcgagaagacggcccagattatcgccggagcgttcggcaacatggatcgactcctggcc
gccagcgagactgagattgtcaagattccgggaattggccctaagattgggcatagcgtt
tactgctggctacaggagccagcaaatcgagcgcttatcgagcggctacgaggagtcggg
gtcaatatgactgaggagcagcatagcatcagcggtccgctttcgggacagagcttcttg
ctcactgggcgtctcagccagatgacccgcactgcggcagaagatgccatcaagggcctg
ggcggaactattgcttcgggagtaagcaagtcgctcaatcatctgattgtcggggaagat
gcaggctctaagctcacaaaagcccaaaaagctggcgtccctattcatgatgaagagtgg
ctgatcgatctattaaaagagcacgtcactgcagaatag
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