Candidatus Kinetoplastidibacterium blastocrithidiae TCC012E: BCUE_0754
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Entry
BCUE_0754 CDS
T02463
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kbt
Candidatus Kinetoplastidibacterium blastocrithidiae TCC012E
Pathway
kbt03030
DNA replication
kbt03410
Base excision repair
kbt03420
Nucleotide excision repair
kbt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kbt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BCUE_0754
03410 Base excision repair
BCUE_0754
03420 Nucleotide excision repair
BCUE_0754
03430 Mismatch repair
BCUE_0754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kbt03032
]
BCUE_0754
03400 DNA repair and recombination proteins [BR:
kbt03400
]
BCUE_0754
Enzymes [BR:
kbt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BCUE_0754
DNA replication proteins [BR:
kbt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BCUE_0754
DNA repair and recombination proteins [BR:
kbt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BCUE_0754
NER (nucleotide excision repair)
GGR (global genome repair) factors
BCUE_0754
MMR (mismatch excision repair)
DNA ligase
BCUE_0754
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BCUE_0754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
BRCT_2
HHH
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
RNA_pol_A_CTD
Zn_ribbon_PADR1
Motif
Other DBs
NCBI-ProteinID:
AGF49911
UniProt:
M1M0V5
LinkDB
All DBs
Position
complement(528989..531052)
Genome browser
AA seq
687 aa
AA seq
DB search
MFERTKLIKNKIEHLCKTIEEHNVHYYCYDNPIISDSEYDVLMNELLNLESMYPNLITEY
SPTQRVGSTPLESFNKIEHSIPMLSLSNAFTSEDVELFNKRVISSLLKKIDLRDDVEYFC
DLKLDGLAINLRYENGILVHGSTRGDGYIGEDVTANIRVIRSIPLRLIGDFPKILDVRGE
VLMYNVDFENLNNYNIRNGGRVFVNPRNAAAGSLRNLDSKVSSMRKLRFFAYGWGKIIDD
QSAPNKLFKCQYKTHDSVLDWFISLGLPVNKRYHKVVSGISGILDYYNSIVNDRDSLPYG
IDGVVYKVNSLDRQEMLGYSSRAPKFALAHKFLAEEAVTQIIGIDVQVGRTGVITPVARL
KPIFVGGVTISNATLHNEHEIRRKDIRIGDFVVIRRAGDVIPEVVYPIIDLRPVNTTPFH
MVVSCPICSSSIKRIDNEIAYRCTGGLYCSAQLKQGLKHALSRKAFNIVGFGEKLIDKLV
DLGYLKSLVDVFRLSCSDLMKVELVAEKSATNLLRAINNARKPSLSNFIFAMGIRHVGEA
TAIDIANNFNTLESIIQASIDDLLSVKDVGSKTAESIRLFFSEEHNIGIINSLKSIGVYP
LSDEYYKSNNLKLLEGKLFAITGRLPDYSREDIVKHIEDNGGRVTSNISKKNHYLIAGES
SGKKLDFAIDNGIKVIDQKAFMKLIDL
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtttgagcgtactaagttaataaaaaacaagatagaacatttatgcaagactatagag
gaacacaacgtacattattattgctatgacaatcccattataagtgattcagagtacgat
gtcttaatgaatgagttattaaatctagaatccatgtaccctaatttaataacagaatat
tctcctacacagagggtaggatccactcctcttgagtcatttaataaaattgagcattca
atacctatgttatctctttccaatgcatttacatcagaagatgttgaattgtttaataaa
agagtaatttcctcgttacttaagaaaattgatcttagagatgatgttgagtatttttgt
gatttgaagctagatggccttgctataaaccttagatacgaaaatggtattttagttcat
ggatctacccgtggtgatggttatattggtgaagatgttactgctaatatacgtgttata
agatctattccattaagattaattggagattttcctaagatattggatgtaaggggagaa
gtactaatgtacaatgtggatttcgaaaatctcaacaactataatataagaaatggagga
agagtttttgtaaaccctcgcaatgctgctgctggaagcttgagaaatcttgattcaaag
gtcagttctatgcgtaaattaagattttttgcttatggatggggcaaaattattgatgat
caatctgcgcctaataaattatttaaatgtcagtataaaactcatgattcagtacttgat
tggtttatttcattaggattgcctgttaataaaagataccataaggttgtatcaggaatt
agtggtatattggactattataactcaatagttaatgaccgtgattctttgccatatggt
atagatggtgtagtttataaagtaaattctttggataggcaagagatgcttggatactca
tccagagctccgaagtttgctctggctcataagtttttggcagaagaggcagttacacag
attattggtatagatgttcaggtaggaagaactggtgtcataactcctgtagctcgttta
aagcctatttttgttggtggagttactatttctaatgctacattacacaatgaacacgaa
ataagacgcaaagatatacgcataggagattttgttgtaattagaagagctggtgatgtg
ataccagaagttgtttatccaattatagatttgagacctgttaatacaacaccatttcat
atggttgttagttgtcctatttgtagttcttcaattaaacgcattgataatgagattgcg
tatcgttgtactggtggtttatattgctccgctcaattaaaacaaggattaaagcacgct
ctaagtcgcaaggcatttaatatagttggttttggagaaaaacttattgacaaattggtt
gatttgggatacttaaaatctttggttgatgtttttagattatcatgttctgatttgatg
aaggtagaattagtagctgagaaatcagctactaatttattaagagctattaataatgca
cgtaaacctagtctgagtaatttcatatttgctatgggaataagacatgtgggcgaggca
acagctattgatatagctaataattttaatactcttgagagtattattcaggctagtatt
gatgatttgctatcagttaaggatgttggatctaagacagctgaatccataaggttgttt
ttttctgaagaacacaatataggcataataaattctttaaagtctataggtgtttatcct
ttatctgatgaatattacaaatcaaataatctaaaactattagaaggtaaattatttgct
ataacaggtagattgccagactattctagagaagatattgtaaaacatatagaggataat
ggaggtagagttacaagcaacatatctaaaaaaaatcattatttaattgctggtgagagt
tctggcaagaagttagattttgcgatagataatggaataaaagtaatagatcaaaaagca
tttatgaagctaattgatctatag
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