Kosakonia calanthes: AAEY27_06700
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Entry
AAEY27_06700 CDS
T10644
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kca Kosakonia calanthes
Pathway
kca03030
DNA replication
kca03410
Base excision repair
kca03420
Nucleotide excision repair
kca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AAEY27_06700 (ligA)
03410 Base excision repair
AAEY27_06700 (ligA)
03420 Nucleotide excision repair
AAEY27_06700 (ligA)
03430 Mismatch repair
AAEY27_06700 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kca03032
]
AAEY27_06700 (ligA)
03400 DNA repair and recombination proteins [BR:
kca03400
]
AAEY27_06700 (ligA)
Enzymes [BR:
kca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AAEY27_06700 (ligA)
DNA replication proteins [BR:
kca03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AAEY27_06700 (ligA)
DNA repair and recombination proteins [BR:
kca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AAEY27_06700 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AAEY27_06700 (ligA)
MMR (mismatch excision repair)
DNA ligase
AAEY27_06700 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AAEY27_06700 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DZR_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
WZV99570
LinkDB
All DBs
Position
1431579..1433597
Genome browser
AA seq
672 aa
AA seq
DB search
MESIEQQLTELRTTLRHHEHLYHVLDAPEIPDAEYDRLMRELRELETQHPDLITPDSPTQ
RVGAAPLTAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSPEALVYCCELKLDGLA
VSILYENGVLMRAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQSG
FEKINEDARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPRSHL
ERLQQFKAWGLPVSERIRLCSTPEAVLDFYHQVENDRSTLGFDIDGVVIKVDSLDLQEQL
GFVARAPRWAVAFKFPAQEQVTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIDRLGLRIGDKVVIRRAGDVIPQVVNVVLSDRPEETREVVFPAHCPVCGSDVERVEG
EAVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALENAKETTFARFLYALGIREVGEATAAGLAAYFGTLDALIA
ASVDDLQKVPDVGVVVAKHVSNFFHEESNREVIRQLVEEVGIHWPAPVIVKAEEIDSPFA
GKTVVLTGSLSQLSRDDAKARLTALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEV
IDEAEMIRLLGD
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaattgaacaacaactaactgaactgcgaaccacacttcgccatcatgaacat
ctgtaccatgttttggacgccccggagattccggacgcggagtacgatcggttaatgcgc
gagttgcgcgagctggaaacgcagcatcctgatctcatcacgccagattccccgacccag
cgcgtcggcgcagccccgttaaccgcctttagtcaggtacgccatgaagtgccgatgctg
tcgctggacaacgtctttgatgaagagagcttcctggcatttaacaagcgcgtgcaggac
cggctgaaaagccccgaggcgctggtttactgctgcgaactgaaactcgatggcctggcg
gtaagtatcctgtacgaaaacggcgtgttgatgcgcgcagcgacgcgcggcgatggcacg
accggggaagacatcaccaccaacgtgcgtaccatccgcgcaatccctttgaagctgcat
ggcgacaatattccggctcgccttgaagtgcgcggcgaagtgtttttgccacagtccggc
tttgaaaaaatcaatgaagatgcccgccgtactggcgcgaaagtgtttgctaatccgcgc
aacgcggcggcgggttctttgcgtcagcttgatccacggattaccgcgaagcgtccgctc
actttcttttgctatggcgttggtatccttgaaggcggcgagctgccgcgcagccatttg
gaacgcttacaacagttcaaagcttggggtttgccggtgagtgagcgcatacgtctgtgc
agcacgccggaagcggtgctggatttttatcatcaggttgaaaacgatcgctcgacactg
ggcttcgatatcgacggggtggtgattaaggttgactcgctggatctgcaagagcagctt
ggttttgtggcgcgcgcgccgcggtgggcggtggcgtttaaattcccggcgcaggagcaa
gtgaccttcgtgcgcgatgtggagttccaggtggggcgaaccggggcgattacaccggtg
gcaaggctcgaaccggtgcaggttgccggtgtgctggtcagcaacgcaacattgcataac
gccgatgaaatcgaccgtcttggcctgcgcattggcgataaagtggtgattcgccgcgcc
ggagatgttattccgcaggtggtgaacgtggtgctttcggatcgcccggaagagacgcgc
gaagtggttttcccagcgcattgcccggtttgcggttctgatgtggaacgtgtcgaagga
gaagccgttgctcgctgcacaggcggattgatttgtggcgcacagcgcaaagaagcgctg
aaacattttgtctctcgtcgcgccatggatgtcgatggcatgggcgataagataatcgac
caactggttgaaaaagagtatgtacacacgccagcagacctgtttcgcctgaccgccgga
aagctaaccgggctggaccgtatggggccgaaatcggcgcaaaacgtagtgaatgcactg
gaaaacgccaaagagacaacctttgctcgcttcctctatgcgctcggtattcgcgaagtg
ggagaagccacggcggcgggattggcggcgtattttggcacgctggacgccttgattgcg
gcatcggttgacgatctccagaaagtgccggatgtcggcgtggtagtggcgaaacatgtg
agtaatttcttccatgaagagagcaaccgcgaggttattcgccagctggtggaagaagtg
ggcattcactggcctgcgccggtcatcgttaaagccgaagagatagatagtccattcgcc
ggtaaaacggtggtgctgaccggcagtcttagtcagctctcacgcgatgacgccaaagcg
cgtctgaccgcgctgggcgcgaaagtcgctggcagcgtctcaaagaaaaccgacctggtg
atcgccggagaagccgccggttcgaaactcgcgaaggcgcaagaactggggattgaggtg
attgatgaggccgaaatgatccgtttgctgggggattaa
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integrated database retrieval system