KEGG   Kosakonia calanthes: AAEY27_06700
Entry
AAEY27_06700      CDS       T10644                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
kca  Kosakonia calanthes
Pathway
kca03030  DNA replication
kca03410  Base excision repair
kca03420  Nucleotide excision repair
kca03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:kca00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AAEY27_06700 (ligA)
   03410 Base excision repair
    AAEY27_06700 (ligA)
   03420 Nucleotide excision repair
    AAEY27_06700 (ligA)
   03430 Mismatch repair
    AAEY27_06700 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:kca03032]
    AAEY27_06700 (ligA)
   03400 DNA repair and recombination proteins [BR:kca03400]
    AAEY27_06700 (ligA)
Enzymes [BR:kca01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AAEY27_06700 (ligA)
DNA replication proteins [BR:kca03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AAEY27_06700 (ligA)
DNA repair and recombination proteins [BR:kca03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AAEY27_06700 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AAEY27_06700 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     AAEY27_06700 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AAEY27_06700 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD Nlig-Ia PTCB-BRCT HHH 5_3_exonuc DZR_2 Zn_ribbon_NUD
Other DBs
NCBI-ProteinID: WZV99570
LinkDB
Position
1431579..1433597
AA seq 672 aa
MESIEQQLTELRTTLRHHEHLYHVLDAPEIPDAEYDRLMRELRELETQHPDLITPDSPTQ
RVGAAPLTAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSPEALVYCCELKLDGLA
VSILYENGVLMRAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQSG
FEKINEDARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPRSHL
ERLQQFKAWGLPVSERIRLCSTPEAVLDFYHQVENDRSTLGFDIDGVVIKVDSLDLQEQL
GFVARAPRWAVAFKFPAQEQVTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIDRLGLRIGDKVVIRRAGDVIPQVVNVVLSDRPEETREVVFPAHCPVCGSDVERVEG
EAVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALENAKETTFARFLYALGIREVGEATAAGLAAYFGTLDALIA
ASVDDLQKVPDVGVVVAKHVSNFFHEESNREVIRQLVEEVGIHWPAPVIVKAEEIDSPFA
GKTVVLTGSLSQLSRDDAKARLTALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEV
IDEAEMIRLLGD
NT seq 2019 nt   +upstreamnt  +downstreamnt
atggaatcaattgaacaacaactaactgaactgcgaaccacacttcgccatcatgaacat
ctgtaccatgttttggacgccccggagattccggacgcggagtacgatcggttaatgcgc
gagttgcgcgagctggaaacgcagcatcctgatctcatcacgccagattccccgacccag
cgcgtcggcgcagccccgttaaccgcctttagtcaggtacgccatgaagtgccgatgctg
tcgctggacaacgtctttgatgaagagagcttcctggcatttaacaagcgcgtgcaggac
cggctgaaaagccccgaggcgctggtttactgctgcgaactgaaactcgatggcctggcg
gtaagtatcctgtacgaaaacggcgtgttgatgcgcgcagcgacgcgcggcgatggcacg
accggggaagacatcaccaccaacgtgcgtaccatccgcgcaatccctttgaagctgcat
ggcgacaatattccggctcgccttgaagtgcgcggcgaagtgtttttgccacagtccggc
tttgaaaaaatcaatgaagatgcccgccgtactggcgcgaaagtgtttgctaatccgcgc
aacgcggcggcgggttctttgcgtcagcttgatccacggattaccgcgaagcgtccgctc
actttcttttgctatggcgttggtatccttgaaggcggcgagctgccgcgcagccatttg
gaacgcttacaacagttcaaagcttggggtttgccggtgagtgagcgcatacgtctgtgc
agcacgccggaagcggtgctggatttttatcatcaggttgaaaacgatcgctcgacactg
ggcttcgatatcgacggggtggtgattaaggttgactcgctggatctgcaagagcagctt
ggttttgtggcgcgcgcgccgcggtgggcggtggcgtttaaattcccggcgcaggagcaa
gtgaccttcgtgcgcgatgtggagttccaggtggggcgaaccggggcgattacaccggtg
gcaaggctcgaaccggtgcaggttgccggtgtgctggtcagcaacgcaacattgcataac
gccgatgaaatcgaccgtcttggcctgcgcattggcgataaagtggtgattcgccgcgcc
ggagatgttattccgcaggtggtgaacgtggtgctttcggatcgcccggaagagacgcgc
gaagtggttttcccagcgcattgcccggtttgcggttctgatgtggaacgtgtcgaagga
gaagccgttgctcgctgcacaggcggattgatttgtggcgcacagcgcaaagaagcgctg
aaacattttgtctctcgtcgcgccatggatgtcgatggcatgggcgataagataatcgac
caactggttgaaaaagagtatgtacacacgccagcagacctgtttcgcctgaccgccgga
aagctaaccgggctggaccgtatggggccgaaatcggcgcaaaacgtagtgaatgcactg
gaaaacgccaaagagacaacctttgctcgcttcctctatgcgctcggtattcgcgaagtg
ggagaagccacggcggcgggattggcggcgtattttggcacgctggacgccttgattgcg
gcatcggttgacgatctccagaaagtgccggatgtcggcgtggtagtggcgaaacatgtg
agtaatttcttccatgaagagagcaaccgcgaggttattcgccagctggtggaagaagtg
ggcattcactggcctgcgccggtcatcgttaaagccgaagagatagatagtccattcgcc
ggtaaaacggtggtgctgaccggcagtcttagtcagctctcacgcgatgacgccaaagcg
cgtctgaccgcgctgggcgcgaaagtcgctggcagcgtctcaaagaaaaccgacctggtg
atcgccggagaagccgccggttcgaaactcgcgaaggcgcaagaactggggattgaggtg
attgatgaggccgaaatgatccgtttgctgggggattaa

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