Candidatus Kinetoplastidibacterium crithidiae (ex Angomonas deanei ATCC 30255): CKCE_0134
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Entry
CKCE_0134 CDS
T02413
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kci
Candidatus Kinetoplastidibacterium crithidiae (ex Angomonas deanei ATCC 30255)
Pathway
kci03030
DNA replication
kci03410
Base excision repair
kci03420
Nucleotide excision repair
kci03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CKCE_0134 (ligA)
03410 Base excision repair
CKCE_0134 (ligA)
03420 Nucleotide excision repair
CKCE_0134 (ligA)
03430 Mismatch repair
CKCE_0134 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kci03032
]
CKCE_0134 (ligA)
03400 DNA repair and recombination proteins [BR:
kci03400
]
CKCE_0134 (ligA)
Enzymes [BR:
kci01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CKCE_0134 (ligA)
DNA replication proteins [BR:
kci03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CKCE_0134 (ligA)
DNA repair and recombination proteins [BR:
kci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CKCE_0134 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CKCE_0134 (ligA)
MMR (mismatch excision repair)
DNA ligase
CKCE_0134 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CKCE_0134 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
PTCB-BRCT
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
AFZ82573
LinkDB
All DBs
Position
156115..158199
Genome browser
AA seq
694 aa
AA seq
DB search
MQEEFLNKNYSINELKQIILSLRKEIDFHNINYHCYDDPLISDAQYDALVDKLVKLELLH
PDLIDPNSPTQRVGSSPLPYFNQIEHEVPMLSLSNAFKDDDVVSFDARVKKLLYDNNLVS
PKEDVCYFCDLKFDGLAINIRYEKGLLVSASTRGDGNVGEDVTSNIRTIKSVPLILHGVV
PDILEVRGEVFMRHDDFERLNNHQRMNGDKLFMNTRNAAAGSLRNLDPRVTASRNLKFFA
YGCGNIQNIFQEENFIISNYHSSVINWLSSIGFPVNKTYQEIVNSCSGMLNFYEKINNIR
NSLPYDIDGVVYKVNSLVFQKTLGYSSRAPRFALAHKFSPEEAVTKLLSIDVQVGRTGAI
TPVARLDPVLISGANISSATLHNENEIIRKDLRIGDFVRIRRAGDVIPEVIEVVKELRSN
VVSIFNMPHYCPICNSLLRRIDGESVTRCTGGLFCSAQLKQRLLHAVGRKALNIIGFGES
LIYKLVDSNRIKSLADIYSLNIEDLLDIEKIGPKSANNIMESIDRSRSPKLDRFLFSLGI
RHVGDSTANTIASKFISLDRIMNCSKEDFMELPDIGPKIASSIAIFFSEQQNIDLLDKMK
KNGLNPESFEVNTEVLPSLEGKTFVLTGKLKRFSRDEIRDYITKNGGKVLNTISSNVNYL
LVGDEPGSKVAKAQQFPNLIIINEEDFMYLVEQT
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagaagagtttttaaataaaaattatagcattaatgaattgaaacaaataattctt
tccttaagaaaagaaattgattttcataatataaattatcattgttatgatgatcctttg
attagcgatgcccaatatgatgcattggtggataagctagttaaattggagttattgcat
cctgatttaatagaccctaattctccaacgcagcgtgtagggtcttcgcctttgccttat
tttaatcaaattgaacatgaagtgccaatgttgtctttgtctaatgcatttaaagatgat
gatgttgtttcttttgatgccagggtaaaaaaactattatatgataataatttggttagt
cctaaggaagatgtctgctatttttgtgatttaaagtttgacggacttgctataaatata
cgttacgaaaaaggtttactagtaagcgcttctacaagaggtgatggtaacgttggagaa
gatgttacatctaatatcagaactataaagtctgttccactgattttacatggtgtagtt
cctgatatcttagaagttagaggtgaagtttttatgagacatgatgatttcgaaagatta
aacaatcatcaaagaatgaacggtgataagcttttcatgaatactcgtaatgctgctgct
ggtagtttaagaaatttagatcccagggtaactgcttcacgtaatttgaaattttttgca
tatggttgtggcaatattcaaaatatttttcaagaagaaaattttataatatctaattat
catagttcagttataaattggctttcgtctataggatttccagttaacaaaacctatcag
gaaatagtgaacagctgtagtggtatgctgaatttttatgaaaagattaacaacataaga
aattctttgccttatgatatagatggagttgtgtataaagttaattctttggtttttcaa
aaaacacttggttattcatctagggcccctagatttgctttagcacataaattttctcca
gaagaggctgtcacaaaattgctttctatagatgttcaagtaggtagaactggagctata
acgccagtagctagactggatccagttcttatatcaggagccaatatatcaagtgctact
ttgcataatgagaatgaaataatccgtaaagatctaagaattggtgattttgtaagaatc
agaagagcaggagatgttattccagaggttattgaagtagtcaaagaattacgatcaaac
gttgttagtatttttaatatgccacattactgtcctatttgtaactcattactacgtaga
atagatggtgaatctgtaactcgttgtactggcggtctattttgttcagcgcaattgaag
caaaggttactacatgcagtaggtagaaaagctttgaatattattggttttggcgagagc
ttgatttataaactagtagatagtaatagaataaaatctttggctgatatatatagctta
aatattgaagatttattagatatagaaaagatagggcctaagtctgctaataatattatg
gagtctatagataggtctcgttctccaaaattagatagatttttattctctctaggtata
agacatgtaggagatagtactgctaacactattgcaagtaagtttatttctttagataga
attatgaattgtagtaaagaagattttatggaattgcctgatattgggccaaaaatagct
tcttcaatagcaatttttttttcggaacaacagaatatagacttgttagataaaatgaag
aaaaatggtttaaatcctgaatcgtttgaagttaacacagaagttttgccttcattggaa
ggtaaaacttttgtgttaaccggaaagctaaaaagattctctagggatgagattagagat
tatataactaagaatggtggtaaagttttaaatacaatttcatcaaatgtcaattatttg
cttgttggtgatgagcctggcagtaaagtagccaaggctcaacaattccctaatttgata
attataaatgaggaagattttatgtatttagttgaacaaacctag
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