Kosakonia cowanii: BWI95_21850
Help
Entry
BWI95_21850 CDS
T04691
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kco
Kosakonia cowanii
Pathway
kco03030
DNA replication
kco03410
Base excision repair
kco03420
Nucleotide excision repair
kco03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BWI95_21850 (ligA)
03410 Base excision repair
BWI95_21850 (ligA)
03420 Nucleotide excision repair
BWI95_21850 (ligA)
03430 Mismatch repair
BWI95_21850 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kco03032
]
BWI95_21850 (ligA)
03400 DNA repair and recombination proteins [BR:
kco03400
]
BWI95_21850 (ligA)
Enzymes [BR:
kco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BWI95_21850 (ligA)
DNA replication proteins [BR:
kco03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BWI95_21850 (ligA)
DNA repair and recombination proteins [BR:
kco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BWI95_21850 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BWI95_21850 (ligA)
MMR (mismatch excision repair)
DNA ligase
BWI95_21850 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BWI95_21850 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
APZ07494
UniProt:
A0A830ZEL0
LinkDB
All DBs
Position
complement(4609458..4611476)
Genome browser
AA seq
672 aa
AA seq
DB search
MESIEQQLTELRTTLRHHEHLYHVMDAPEIPDAEYDRLMRELRELEAQHPDLITPDSPTQ
RVGAAPLTAFTQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDALIYCCELKLDGLA
VSLLYENGVLMRAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQSG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGILEGGELPNSHL
ARLQQFKAWGLPVSDRIRLCGTPEEVLAFYHKVEEDRPTLGFDIDGVVIKVDSLDLQAQL
GFVARAPRWAVAFKFPAQEQLTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIDRLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETREVTFPAHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLDALIA
ASVDELQKVPDVGVVVAKHVHNFFSEESNRDVIRQLTEEVGIHWPAPLVVNAEEIDSPFA
GKTVVLTGSLSQLSRDEAKERLTALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAV
IDEDEMIRLLGA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaattgaacaacaactgacagaactgcgaactacccttcgccatcatgaacat
ctctatcacgttatggacgcgccggagatcccggatgccgagtacgatcgcctgatgcgc
gagctgcgcgagctggaagcgcagcatccagatctgattacgcccgattcgccgacccag
cgcgttggcgccgcgccgctcaccgcttttacgcagatacgtcatgaagtgccgatgctg
tcgctcgataacgtcttcgacgaagagagctttctggcattcaataaacgcgtacaggat
cgcttaaagagcagcgacgcgctgatctactgctgcgagctgaagcttgacggcctggcg
gtcagcctgctgtatgaaaacggcgtgctgatgcgcgctgccacgcgcggcgatggcact
accggggaagatatcacctctaacgtgcgcaccatccgcgccattccgctgaaactgcac
ggggataacattccggcgcggctggaagtgcgcggcgaagttttcctgccgcaatccggc
tttgaaaagatcaatgaagaggcgcgccgcaccggcgggaaagtgtttgctaacccgcgt
aacgccgccgccgggtcactgcgtcagctcgatccgcgtatcaccgcgaagcgtccgctc
accttcttctgctacggcattggcatccttgaaggcggcgagctgcccaacagccacctg
gcgcgtttgcagcagtttaaagcgtggggattgccggtcagcgatcgcatccgcttgtgc
ggcacgccggaagaggtgctggcgttctaccataaagttgaggaagaccgtccgacgctc
gggtttgatatcgacggcgtggtaatcaaagtcgactccctcgatctgcaagcgcagctc
ggctttgtggcgcgtgcgccgcgctgggcggtggcgtttaaattcccggcgcaggagcag
ctgacgtttgtgcgcgatgtcgaattccaggtgggccgtaccggggcgataacccctgtc
gcacgccttgagccggtacacgttgccggcgtgctggtcagtaacgccaccctgcataat
gccgatgagattgaccgtcttggcctgcgtatcggtgacaaagtggtgattcgccgcgcc
ggagatgtgatcccgcaggtggtgaatgtggtgctctccgaacgtccggaagagacgcgg
gaagtcaccttcccggcgcactgcccggtgtgcggctctgatgtcgagcgtgtggaaggc
gaagcggttgcccgctgtaccggtggcctcatctgcggcgcgcagcgcaaagagtcgctt
aagcatttcgtctcgcgccgcgcgatggatgtggatggcatgggcgataagattatcgac
cagctggttgagaaggagtacgtccacacgcctgcggatctcttccgcttaactgccggt
aagctgaccggtctcgatcggatggggccgaagtcagcacaaaacgtagtcaacgcgctg
gaaaaagcgaaagagaccacctttgcccgtttcctctatgcgctcggcattcgcgaagta
ggcgaagcgacggctgcagggctggcggcctacttcggcacgctggacgcattgatagca
gcctccgttgacgagctgcaaaaagtgccggacgtcggcgtggtggtggcaaaacacgtg
cataacttcttcagtgaagagagcaatcgcgacgtgattcgccagctgacggaagaagtg
ggtattcactggcccgcgccgctggtggttaacgccgaggagatcgacagcccatttgcc
ggtaaaaccgtggtgttaaccggtagcctgagccagctttcgcgcgacgaggccaaagag
cgcttaacggcgctgggggcgaaagtagctggcagcgtatcgaagaagaccgatctggtg
attgctggtgaagccgcaggctcgaagctggcaaaagcgcaggagctgggcattgcggtc
attgatgaagatgaaatgattcgtctgctgggagcctga
DBGET
integrated database retrieval system
