Kluyvera cryocrescens: RIN60_00735
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Entry
RIN60_00735 CDS
T09399
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kcy
Kluyvera cryocrescens
Pathway
kcy03030
DNA replication
kcy03410
Base excision repair
kcy03420
Nucleotide excision repair
kcy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kcy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RIN60_00735 (ligB)
03410 Base excision repair
RIN60_00735 (ligB)
03420 Nucleotide excision repair
RIN60_00735 (ligB)
03430 Mismatch repair
RIN60_00735 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kcy03032
]
RIN60_00735 (ligB)
03400 DNA repair and recombination proteins [BR:
kcy03400
]
RIN60_00735 (ligB)
Enzymes [BR:
kcy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RIN60_00735 (ligB)
DNA replication proteins [BR:
kcy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RIN60_00735 (ligB)
DNA repair and recombination proteins [BR:
kcy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RIN60_00735 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RIN60_00735 (ligB)
MMR (mismatch excision repair)
DNA ligase
RIN60_00735 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RIN60_00735 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
RNA_ligase
HHH
Motif
Other DBs
NCBI-ProteinID:
WNN74112
LinkDB
All DBs
Position
152416..154092
Genome browser
AA seq
558 aa
AA seq
DB search
MSRWLVVVTLFLATDVQAICPVWSPTRAGQEIAQLQGQLDEWNEAYWRRGASEVSDGVYD
QLSARLAAWQRCFGTEVPEHTYLSVNKGTQRHPVAHTGVRKLADAQAMQQWMQGKRDLWV
QPKVDGVAVTLVYQHGRLQRVISRGDGVFGEDWTQKARRITALPQTAEGALANSVLQGEI
FLRADGHIQQKKGGMNARSQVAGMLLRKGDDASLSRLSVFVWAWPDGPATMQQRLALLSA
SGFDLTARYTYPVTQMKDVADWRERWFTLPLPFATDGVVVRAANEPDGKSWQPAQGTWVA
AWKYRPVSQVAEVSGIRFTIGRTGKIAVVAELLPVKLDDKRVQRVNIGSVQRWQKMDITV
GDQLQVSLAGQGIPRLDGVVWRGLDRIKPTPPASRYHSLTCFYRSAECREQFMARLNWLG
ASQVLNIEGVGEAVWNSLILAHSFDHIFSWLELTSQQLEETPGITAARARQIWHRFEIAR
RQPFRLWLKALGLPLPSGALKALSDGSWKQLAARDDLHWQNLPGVGPEKARNLMAFIHPP
TVVELTGQLRLYGINGFD
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgatggctggtagttgtaacgctatttcttgcgacagacgtccaggcaatttgt
cctgtttggtcgccaacacgtgctgggcaggagattgcccaattgcagggacagcttgat
gaatggaatgaagcatattggcggcggggcgcaagcgaagttagcgatggggtttacgat
cagctctcggcgcgcctggctgcgtggcagcgctgttttggtactgaagtcccagagcat
acctatttgtcagtgaataaaggaacgcagagacatcccgtcgcgcataccggcgtacgt
aagcttgctgatgcgcaggccatgcaacaatggatgcagggtaaacgcgatctgtgggtg
cagccaaaggttgatggcgtagcggtgacgttggtctatcaacacggccgtttacagcgc
gtaattagccggggggatggggtgtttggggaggactggacgcagaaggctcggcgcatc
accgccttaccgcagacggctgaaggggcgctggcgaacagcgttttgcagggggagata
ttcttgcgcgctgacgggcatatacagcagaaaaaaggtggcatgaatgcgcgttcacag
gttgctggcatgctactgcgaaagggcgatgatgcctcgctttcgcgcctatcggtcttt
gtttgggcatggccagacggtcctgcaacaatgcaacagcggttagcattgttgtccgct
tctggatttgatctgaccgcacgctatacctatcccgtcacgcaaatgaaagatgtggcc
gactggcgtgaacgttggtttaccttgcctcttccttttgcaaccgatggggtggttgtt
cgtgctgccaatgagccggacggcaagagttggcagccggcgcaggggacatgggtagcg
gcatggaagtatcgaccggtttcgcaggtggctgaagtgagcggcattcgcttcaccatt
gggcgtaccggcaagattgcggtcgtggctgagttgctgccggttaaactggatgataag
cgggtgcagcgggtgaatattggctctgtgcaacgttggcaaaaaatggatatcacagtt
ggcgatcagctccaggtcagcctggcggggcaggggatcccacgcctggatggcgtcgtc
tggcgagggctggacagaatcaaaccgactccaccggcctcccgctatcattcgctaacc
tgtttctaccgctcagcagaatgccgcgagcaatttatggcccgccttaactggctggga
gcatctcaggtgttaaatattgaaggggtgggggaagcggtgtggaactcgctcattctg
gcacattcctttgaccatattttctcatggctcgaactgacgtctcagcagcttgaagaa
acgcctggaataacggccgcgagggcgcggcagatttggcaccgttttgaaattgcgcgt
cggcagccttttcgtctctggctaaaagcgctggggctgcctttgccttcaggtgcactg
aaggcactcagcgatggctcctggaagcagcttgccgcccgtgatgacctgcactggcaa
aacctaccgggcgtaggtccggaaaaagcccgcaatctgatggcgtttattcaccccccc
accgttgtcgaactcaccgggcagttgcgtttatatgggataaacggttttgactag
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