Kluyvera cryocrescens: RIN60_06745
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Entry
RIN60_06745 CDS
T09399
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kcy
Kluyvera cryocrescens
Pathway
kcy03030
DNA replication
kcy03410
Base excision repair
kcy03420
Nucleotide excision repair
kcy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kcy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RIN60_06745 (ligA)
03410 Base excision repair
RIN60_06745 (ligA)
03420 Nucleotide excision repair
RIN60_06745 (ligA)
03430 Mismatch repair
RIN60_06745 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kcy03032
]
RIN60_06745 (ligA)
03400 DNA repair and recombination proteins [BR:
kcy03400
]
RIN60_06745 (ligA)
Enzymes [BR:
kcy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RIN60_06745 (ligA)
DNA replication proteins [BR:
kcy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RIN60_06745 (ligA)
DNA repair and recombination proteins [BR:
kcy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RIN60_06745 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RIN60_06745 (ligA)
MMR (mismatch excision repair)
DNA ligase
RIN60_06745 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RIN60_06745 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
RNA_ligase
Prok-E2_C
Motif
Other DBs
NCBI-ProteinID:
WNN73040
LinkDB
All DBs
Position
1395668..1397683
Genome browser
AA seq
671 aa
AA seq
DB search
MQPIEQQLTELRATLRHHEYLYHVLDTPELPDAEYDRLMRELRELEAQHPELITSDSPTQ
RVGAQPLAAFSQIRHEVPMLSLDNVFDEDSFLAFNKRVQDRLKSTDKLTWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPARLEVRGEVFMPQPG
FEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGWGVLEGGELPGTHL
GRLQQFKEWGLPVSDRVKLCDSPDEVLAYYHKVEEDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPDDTQEVVFPTHCPVCNSDVERVEG
EAVARCTGGLICGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFTLTAG
KLTGLDRMGPKSAQNVVSALEKAKQTTFARFLYALGIREVGEATAAGLAAFFGTLEALEA
ASVDELQKVPDVGVVVANHVFNFFAEESNREVIQQLLKEGVNWPAPVVINADEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMLRLLGV
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccaatagaacaacaactgaccgaactgcgagcgacgcttcgccatcatgaatat
ctttatcatgttttagatacaccggagctgccggacgcggagtatgaccgtctgatgcgc
gagctgcgcgagctggaagcccagcacccggaactcatcacttctgattcaccgacccaa
cgcgtgggtgcccagccgctggctgcatttagccagatccgccatgaagtaccgatgctg
tccctggacaacgtgtttgatgaagacagttttctcgcttttaacaaacgcgttcaggac
cgtctgaaaagcaccgataaactgacctggtgttgtgaactcaagcttgatgggctggcc
gtcagtatcctgtacgaaaacggcgtgctggtgagtgcggcaacgcgcggtgacggcacg
accggtgaggacattacctccaatgtgcgtaccatccgtgcgattccgctgaaactgcgg
ggtgacaacatcccggctcgtctggaagtgcgcggtgaagtgtttatgccgcagcccggt
tttgaaaaaattaacgaagaagcgcgccggacgggaaacaaagtatttgctaacccgcgt
aatgccgccgccggttcgttgcgccagcttgacccgcgtattaccgcgaagcgaccgctt
actttcttctgttatggctggggtgtgctggaaggcggtgaattgcccgggacccatctg
ggtcgcctgcagcagtttaaggaatggggcctgccggtcagcgaccgcgtgaagctgtgt
gattcaccggacgaagtgcttgcttactaccacaaggttgaagaagaccgaccaacgctg
ggctttgacatcgacggcgtagtgattaaggtcaattcgctggcgctgcaagagcagctt
ggttttgtagcgcgcgcgccgcgctgggccgtagcgttcaaattcccggcgcaggagcaa
atgacctttgtccgcgacgtggagtttcaggttggtcgtaccggtgccattacgccggtg
gcacgccttgaaccggttcaggtcgccggtgtactggtcagtaacgccacgctgcataac
gcggatgaaattgaacgcctggggctgcgtattggcgataaggtggtgatccgccgtgcc
ggcgacgtgattcctcaggtggtgaacgtggtgctttcagagcgcccggatgacactcag
gaagtcgtcttcccgacgcactgtccggtgtgtaactctgatgttgaacgcgttgaaggt
gaggccgtcgcgcgctgtaccggcggcttgatctgcggcgcacagcgtaaagaagcgctc
aaacactttgtttcccgccgtgcgcttgatgttgacggcatgggcgacaaaattatcgat
cagttggtggaaaaagagtacgtccatacccctgccgacctgttcactctgaccgcgggc
aaactcaccgggcttgaccgtatggggcctaaatcggcgcagaatgtggtgagtgcgctg
gaaaaagccaaacagaccacctttgcccgtttcctctacgctttaggcatccgtgaagtc
ggggaggcgacggccgctgggctggctgctttcttcggtacgctggaagcgctggaagcg
gcgtcggtagatgagctgcaaaaagtgcctgacgtcggcgttgtcgtggcaaaccatgtg
tttaacttctttgctgaagagagcaatcgcgaggttatccagcagttgcttaaagaaggt
gttaactggccggcgccggtcgtcatcaatgccgatgagattgacagcccgttcgcggga
aaaaccgtggtgctgaccggaagcctgagccagatgtcccgtgatgatgcgaaggcgcgt
ttggttgagctgggagcgaaagttgctggcagcgtgtcgaagaagaccgacctggtgatt
gccggtgaagctgcgggttcgaagctcgcgaaagcacaggaattgggcattgaggtgatt
gacgaggctgaaatgctgcgtctgttaggagtctaa
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