Dokdonia sp. 4H-3-7-5: Krodi_0116
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Entry
Krodi_0116 CDS
T01484
Name
(GenBank) Pyridoxal-5'-phosphate-dependent protein beta subunit
KO
K01697
cystathionine beta-synthase [EC:
4.2.1.22
]
Organism
kdi
Dokdonia sp. 4H-3-7-5
Pathway
kdi00260
Glycine, serine and threonine metabolism
kdi00270
Cysteine and methionine metabolism
kdi00670
One carbon pool by folate
kdi01100
Metabolic pathways
kdi01110
Biosynthesis of secondary metabolites
kdi01230
Biosynthesis of amino acids
Module
kdi_M00338
Cysteine biosynthesis, homocysteine + serine => cysteine
Brite
KEGG Orthology (KO) [BR:
kdi00001
]
09100 Metabolism
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
Krodi_0116
00270 Cysteine and methionine metabolism
Krodi_0116
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
Krodi_0116
Enzymes [BR:
kdi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.22 cystathionine beta-synthase
Krodi_0116
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALP
CBS
DUF7689
Motif
Other DBs
NCBI-ProteinID:
AEE18106
UniProt:
F4AXI9
LinkDB
All DBs
Position
complement(135416..136780)
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AA seq
454 aa
AA seq
DB search
MKYAENILGTIGDTPMVKMNALVKDLPCLVLAKYETFNPGNSVKDRMALQMVEDAEAAGI
LKPGGTIIEGTSGNTGMGLALAAIIKGYKMICVISDKQSKEKMDILRAVGSEVVVCPTNV
EPDDPRSYYSTSKRLAEETPNSWYVNQYDNPSNCKAHFNSTGPEIWDQTDGKVTHFVVGV
GTGGTISGVGSYLKMKNPNVKVWGIDTYGSVFKKYKETGIFDENEIYPYITEGIGEDILP
LNVNFSIIDGFTKVTDKDAAVYTRRLAKEEGMFLGNSAGSAIKGLLQLNEEGKFGPDDVV
VVLFHDHGSRYVGKMFNDDWMRERGFLDQEYKVASDLIQNHIDKPLVTVKTEELVSHAIE
RMRDYKISQIPVEDVTGIVGSVDEGDLFRAYMENNEVADLPIKDVMGAAYPIVQKNATVA
EVSKLISKENNAVLVDLGDGKHHIITKHDIINAM
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgaaatacgctgaaaatatattaggaacgataggagacactcctatggtaaaaatgaac
gcacttgtaaaagaccttccttgtcttgtgctagcaaaatatgaaacttttaatcctgga
aattctgtaaaagaccgtatggcattacagatggtagaagatgcagaggctgccgggatt
cttaaacctggagggactattatagaaggtacttctggtaatacgggaatggggcttgcc
cttgctgctattattaaaggatataaaatgatctgtgtaatctcagacaagcagtctaaa
gagaagatggatatcttgcgtgctgtaggtagtgaggtggtagtgtgtcctacaaatgta
gagccagatgatccaagatcttactactctacatcaaaaagacttgccgaagaaacacca
aatagctggtacgtaaaccagtatgataatccttctaactgtaaggcacactttaatagt
acaggaccagaaatctgggatcaaacagatggaaaggtaacgcactttgtggtaggtgta
ggaacaggaggtaccatctctggggtaggaagctatcttaaaatgaaaaacccaaatgta
aaagtatggggaattgatacgtacggttctgtatttaaaaaatataaggagacagggatt
tttgacgagaatgagatttacccatacatcacagagggaataggggaagatatattacca
cttaatgtaaactttagcatcatcgatggttttacaaaggtgacagataaggatgctgcg
gtatacacaagacgccttgctaaagaggaaggaatgttcttggggaattctgctggatct
gcaattaaggggttgttacaacttaatgaggaaggaaaatttggtccagatgatgttgtt
gttgtattgtttcacgatcacggaagccgttacgtaggtaaaatgtttaatgacgactgg
atgcgtgagcgcggcttcttagaccaagaatataaagtagcaagcgatttaatccagaat
catatagataaaccactcgttactgtaaagacagaggagcttgtgtcacacgctatagag
cgcatgcgtgattataaaatctcacaaatccctgtagaagatgtgacaggtattgtaggt
tctgtagatgagggtgacctctttagagcatatatggagaacaacgaggtggcagattta
cctataaaggatgtaatgggagcagcgtatcctattgtacagaaaaatgctactgtagca
gaggtttcaaagcttatctcaaaagagaataatgcagtcttagtagatctgggtgatggt
aaacatcatatcattacaaagcatgatattattaatgctatgtaa
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