Candidatus Kirkpatrickella diaphorinae: N5W20_02005
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Entry
N5W20_02005 CDS
T09554
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kdp
Candidatus Kirkpatrickella diaphorinae
Pathway
kdp03030
DNA replication
kdp03410
Base excision repair
kdp03420
Nucleotide excision repair
kdp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kdp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N5W20_02005 (ligA)
03410 Base excision repair
N5W20_02005 (ligA)
03420 Nucleotide excision repair
N5W20_02005 (ligA)
03430 Mismatch repair
N5W20_02005 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kdp03032
]
N5W20_02005 (ligA)
03400 DNA repair and recombination proteins [BR:
kdp03400
]
N5W20_02005 (ligA)
Enzymes [BR:
kdp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
N5W20_02005 (ligA)
DNA replication proteins [BR:
kdp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
N5W20_02005 (ligA)
DNA repair and recombination proteins [BR:
kdp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
N5W20_02005 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N5W20_02005 (ligA)
MMR (mismatch excision repair)
DNA ligase
N5W20_02005 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N5W20_02005 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
DZR_2
Motif
Other DBs
NCBI-ProteinID:
UYH51670
LinkDB
All DBs
Position
complement(448799..450844)
Genome browser
AA seq
681 aa
AA seq
DB search
MTPEKAREEYARLEQQLEEWNHAYYQEDAPVVDDATYDTARRRALEIEAAYPEFCKPDRV
TQRVGAPVSSGFRKSEHRVPMLSLDNVFNLAEFEQFLERINRFLGLSEEDFRGLQFVAEP
KIDGLSINLTYVNRQLTIGATRGDGTVGENVTENIRTIDQIPTTLPDDAPDEIEIRGEVF
MRKDDFLALNEAMQAAAQRPFANPRNAAAGSLRQLDSKVTRERSLSFFAYAQGFASSPVA
ATHWDYLEKLQKWGFDVNPLRMRLSHPSDVAAEVDQIGQARATLPYDIDGVVIKLDDLTL
QNRLGFVGRAPRWATAWKFPAEQAVTRLNTIEIQVGRTGALTPTAHLAPVNVGGVIVSRA
TLHNEQEIERKDVRPGDLVRIERAGDVIPKIVARVEEDRARGEKFVFPTHCPVCGALAER
AEGEAVLRCTGGLTCRAQIIERLIHFVSRTAMDIEGLGTRSIHELFELGLIEKPGDIFRL
AQHRDQIVALEGWGDLSADNLFRAIDARRVIPFARFMYALGIRRIGVRNAQLIARHYRDY
ETWRQAMKEAAIIGSDARLALGSIVGIGTAIALELVNFFTEPRNLETIEDLRAQLDITPA
AEKQEGPFSGKTIVFTGTLTTLTRPEAKAIAERLGAQVSDSVSSKTHLVVTGEKAGSKAK
KAQELGIEQIDEVEWRRRAGL
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgacgccggagaaagcacgcgaagaatatgcgcggctcgaacagcaactcgaagaatgg
aaccacgcctattatcaggaagacgcaccggtcgttgatgacgccacatacgataccgcg
cggcggagagccctcgaaatagaggcggcctatccggaattctgcaagccggaccgcgtg
acgcaacgcgtcggcgcgccggtttccagcgggtttcgtaagtcagaacatcgcgtgccc
atgttgtcactcgataatgtcttcaatctggcggaatttgagcagtttctggagcgcatc
aatcgctttctggggctttctgaggaggatttccgcggcctgcaatttgttgcagagccc
aaaattgacggcctctccatcaatctgacgtacgtcaaccgtcaactcaccatcggcgcc
acgcgcggcgatgggacggttggtgagaatgtgacggaaaatatccgcacgattgatcag
atcccgaccaccctccccgatgacgccccggatgagattgagattcgcggcgaagttttt
atgcgtaaagatgatttcctcgcactgaacgaagccatgcaggcggcggcgcaacgcccc
ttcgccaatccgcgcaatgccgcagccggctccctccgtcagctcgactcaaaagtcacg
cgggagcgctcattgtccttcttcgcttatgcgcagggctttgcttcatcgcccgtcgcg
gcgacgcattgggactatcttgaaaaattgcagaaatggggttttgacgtcaatcccttg
cggatgcgcctgtcacacccatccgacgtcgcggcggaagtggatcaaatcggacaggcg
cgcgccaccctgccctacgacattgatggcgtcgtcattaaactggatgatctcaccctg
cagaaccggctgggctttgtcggccgggcgccacgctgggccacagcgtggaaatttccg
gcagagcaggctgtgacacgtcttaacacgatcgagatccaggtgggccgaaccggcgca
ctgacaccgaccgcacatctcgcgcccgtcaatgttggcggcgtcattgtgtcacgcgcg
acattgcataatgagcaggaaattgagcgtaaggatgtgcgacccggtgaccttgtgcgc
attgagcgcgcgggcgatgtcatcccgaagatcgtcgcgcgtgtagaggaggatcgtgcg
cgtggtgagaaatttgtcttcccgactcattgcccggtttgcggtgcgttggctgagcgc
gctgagggcgaagccgtgctgcgttgcacgggggggctgacctgcagggcgcagatcatt
gaacgcctcattcattttgtctcccgcaccgcgatggatattgaggggttggggacacgc
agcattcacgagctgtttgagctgggcttgattgagaagcccggcgatattttcaggctc
gcgcagcatcgcgatcagatcgttgcgcttgagggctggggcgacctctccgctgataat
ctcttccgggcgattgacgcacgacgagtcatcccttttgcgcgatttatgtacgcattg
ggcatccggcgcatcggcgtgcgcaatgcgcaactgatcgctcgccattatcgggattat
gaaacatggcgtcaggcgatgaaggaagccgccataatcgggtcggatgcgcgcctggcg
ttgggctctattgtggggatcggcaccgcaattgcgttggagttggtcaatttcttcacg
gagccacgcaatctggagacgattgaggatttaagggcgcaacttgacatcacgccagcc
gcggaaaagcaggaaggccctttttcaggcaagacgattgtctttaccggcacgttgacg
acattgacacgcccggaggccaaggccattgcggagcgcctgggcgcgcaagtgtcagac
agtgtctcaagcaaaacacaccttgttgtaacaggtgaaaaagccggttccaaagctaaa
aaagcgcaggaacttggtatcgagcaaatcgatgaagttgaatggcgtcgccgtgcagga
ttatga
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