Kroppenstedtia eburnea: GXN75_02600
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Entry
GXN75_02600 CDS
T06618
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
keb
Kroppenstedtia eburnea
Pathway
keb03030
DNA replication
keb03410
Base excision repair
keb03420
Nucleotide excision repair
keb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
keb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GXN75_02600 (ligA)
03410 Base excision repair
GXN75_02600 (ligA)
03420 Nucleotide excision repair
GXN75_02600 (ligA)
03430 Mismatch repair
GXN75_02600 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
keb03032
]
GXN75_02600 (ligA)
03400 DNA repair and recombination proteins [BR:
keb03400
]
GXN75_02600 (ligA)
Enzymes [BR:
keb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GXN75_02600 (ligA)
DNA replication proteins [BR:
keb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GXN75_02600 (ligA)
DNA repair and recombination proteins [BR:
keb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GXN75_02600 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GXN75_02600 (ligA)
MMR (mismatch excision repair)
DNA ligase
GXN75_02600 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GXN75_02600 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
zf-NADH-PPase
5_3_exonuc
zf-tcix
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
QKI80971
LinkDB
All DBs
Position
485879..487891
Genome browser
AA seq
670 aa
AA seq
DB search
MERKEAEQRIEALRREIHEHDHRYHVLNQPVISDQEYDAMMRELLGLEQEHPELVTPDSP
SQRVGGEPLPYFEKVRHTQPMLSLANAFNFEELQEFDRRIRRLAEVDGVDYVCELKIDGL
AVSIRYEEGVMVRGATRGDGTTGENITQNLKTIRSLPLRLRDAVTLEVRGEAFLPRKEFE
RINRQKESRGETLFANPRNAAAGALRQLDPKLTAERALDIFLYGIGEIHGTETPGTHTES
LDLLSRLGLKVNPDRVTVKGIDDVMQFIDHWREHREELGYDIDGIVIKVDDLELRERLGT
TAKSPRWAIAYKFPAEEGVTVLRGVEIKVGRTGAVTPTALLDPVILAGTTVQRATLHNED
FIREKEILLGDHVIVKKAGDIIPEVVGVVQERRTGEEKPYQMPTECPECGSELVRLEGEV
ALRCINPQCPAQTREGIIHFVSRGAMNIEGLGEKVVTQLFNADLVRGPADLYDLKAEDLL
PLERMGKKSVENLLAAIEESKQNSVEKLIFGLGIRFVGAKGALILAQHFGGMEAIMAADR
EELEAVDEIGPKMAESIETYFDKPEVKETLRRLEAAGVNMMYKGPAPVQRGDSDSPFAGK
TVVLTGTLESMSRKEAADRIEAQGGKVTGSVSKNTDYVIAGEKAGSKLKKARDLGVDVVD
EQAFLAMLEG
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
gtggagcggaaagaagcggaacagcggatcgaggccctgcgccgggagatccatgagcat
gaccatcggtaccatgtgctgaaccagccggtgatcagcgatcaggaatatgatgccatg
atgcgggagttgctcgggctggagcaggagcacccggaactcgtcacccccgattccccc
agtcagcgtgtcggtggggagccactcccctattttgaaaaagtgcgccacacccagccg
atgctgagtctggccaatgccttcaattttgaggagttgcaggagtttgaccggcggatt
cgcaggctggccgaagtggacggggtggattatgtctgcgagctgaagattgacgggctg
gcggtctccatccgctatgaagagggcgtgatggtgcgcggggccacccggggggacggc
accaccggggagaacatcacccaaaatctgaagacgatccgctctctgccccttcgtttg
cgggatgcagtcactctggaagtgcgtggagaagccttcctcccccgaaaagagtttgaa
cggatcaaccggcagaaggagagtcgcggtgagactctgttcgccaatccccgcaatgcg
gcggcgggagccctgcgtcagttggatcccaaactgaccgcagagcgggccctcgatatc
ttcctctacgggatcggggaaatccacggtacagagacgccggggacccataccgaatcc
ctggatcttttgtcccggctcggtctgaaggtgaaccccgaccgggtgaccgtcaagggt
atcgacgatgtgatgcagtttatcgaccattggcgggaacaccgggaagagctgggctat
gacatcgatgggattgtgatcaaggtggatgacctggagctgagagagaggctgggcacc
accgccaagagcccccgctgggcgatcgcctacaagtttcccgcggaggaaggcgtcacc
gtactccggggagttgagatcaaggtgggccggaccggggccgtcactcccaccgctttg
ttggatcccgtcatcctggcgggcaccaccgtccagcgggccacccttcacaatgaggat
ttcatccgggaaaaagagatcctgttgggggatcatgtgattgtgaaaaaggcgggggat
attattcccgaggtggtcggtgtcgttcaagagcgccgcaccggggaggagaaaccctac
cagatgccgacggaatgtcccgaatgcggcagtgagctcgtccggttggagggggaggtg
gccctgcgctgcatcaacccccaatgccccgcccagacccgggaagggatcattcacttc
gtctcccggggagcgatgaatatcgaagggctcggggaaaaagtggtcacccagcttttc
aacgccgacctggtccggggaccggcggatctttacgacctgaaggcggaggacctcctc
cccctggagcggatggggaagaaatcggtggaaaatctcttggccgccatcgaggaaagt
aagcaaaactccgtcgaaaagctgatcttcggcctggggatacgctttgtcggtgccaaa
ggggccctgattttggcgcagcacttcggcgggatggaagccatcatggcggcggaccgg
gaggagctggaggccgttgatgagatcgggcccaaaatggcggaaagcatcgagacctac
ttcgacaaaccggaagtgaaggagacgctccgccggctggaagcggcgggggtcaatatg
atgtataagggaccggctccggtgcagcggggagattccgacagccccttcgccggcaaa
accgtggtgctcaccggcacactggaatccatgtcccgcaaggaagccgccgaccgcatc
gaagcacagggcggcaaggtgaccggcagcgtcagcaaaaacaccgactacgtcatcgcc
ggagaaaaggccggttccaaactgaaaaaagcccgtgacctcggggtggacgtggtggat
gaacaagcctttttggcgatgctggaggggtga
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integrated database retrieval system