Kribbella flavida: Kfla_3966
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Entry
Kfla_3966 CDS
T01155
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kfl
Kribbella flavida
Pathway
kfl03030
DNA replication
kfl03410
Base excision repair
kfl03420
Nucleotide excision repair
kfl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Kfla_3966
03410 Base excision repair
Kfla_3966
03420 Nucleotide excision repair
Kfla_3966
03430 Mismatch repair
Kfla_3966
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kfl03032
]
Kfla_3966
03400 DNA repair and recombination proteins [BR:
kfl03400
]
Kfla_3966
Enzymes [BR:
kfl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Kfla_3966
DNA replication proteins [BR:
kfl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Kfla_3966
DNA repair and recombination proteins [BR:
kfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Kfla_3966
NER (nucleotide excision repair)
GGR (global genome repair) factors
Kfla_3966
MMR (mismatch excision repair)
DNA ligase
Kfla_3966
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Kfla_3966
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_5
HHH_2
BRCT
DNA_ligase_ZBD
IclR_C
HHH
RNA_ligase
PTCB-BRCT
UPF0180
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
ADB33017
UniProt:
D2PR69
LinkDB
All DBs
Position
4248016..4250031
Genome browser
AA seq
671 aa
AA seq
DB search
MGGSVFVVDVGERIETLADQIVQLRDAYYRGAPAVADAEYDAIEDELRALIAAHPELAPD
PNPLDQVGAPAVLHAPVRHSRPMLSLEKATRPEQVEAFFNRFPGRSVVVMPKLDGLSLAL
VYEDGQLARAITRGDGTTGDDVTPLVRALADGVPAKIDAPGRVEVRGEAVMLRSTFAAYN
AAHPDKPLINPRNAAAGTLRAKDPATVAERRLQFLAFDLHTDPDSTDSDLDRALRTLGFA
VADMRHCDDAAAAQAVITTIEQQRNDLDYDLDGAVLRLADRDAFAAAGTRSSSPRGALAY
KFAAEEKTTVLADVVWDVGKTGKIAPVAWLEPVFVGGTTVTRATLANQEVIRARGIKIGD
TVLVRRAGDVIPFVAGVLDASRRTGAEQDIVPPTNCPSCGQPLTEQGNSRELFCTNVSCP
AQTVRRLIHWASRAAADIDAIGGVWIERLAEAGILEHPSDFYHLTKEKLLEFDRIGEVSA
ARMIESIDASRQVGLRRALIGLAVPMASEGTAARLCRAGFGSLEEVADAGEEGLVAVEDI
GPKVAASLVEHLSRLRPELERLRAAGVSLDVLEEDLPPVVAAGAPLAGKTVVVTGAISDP
RSGEKVARPAFQRLCESAGATIASSVSASTDYLITGADVGAAKLTKAEKLGVEVVDQSEI
WSQLFAAGITL
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
gtgggcggtagcgtcttcgtcgtggacgttggggaacgcattgagacgctggccgaccag
atcgtgcagttgcgcgatgcctactaccggggtgcgccggcggtggcggacgcggagtac
gacgcgatcgaggacgagctgcgggcactgatcgcggcgcacccggagctggcgccggac
ccgaatccgctggatcaggtcggcgcgcccgcggtgctgcatgcgccggtccgccactca
cggccgatgctgtccctcgagaaggcgacccgcccggagcaggtcgaggcgtttttcaac
cgcttccccggccggtccgtggtggtcatgccgaagctggacgggttgtcgctggcgctg
gtctacgaggacgggcagctggcccgggcgatcacccgcggcgacggcacgaccggtgac
gacgtgactccgctggtgcgcgccctggcggacggcgtaccggcgaagatcgacgcaccg
ggccgggtcgaggtccggggtgaagcggtcatgctgcgctcgaccttcgccgcctacaac
gccgcccacccggacaagccgctgatcaacccccgcaacgcggccgccggcacgctgcgc
gcgaaggatccggccaccgtcgccgagcgccggctgcagttcctggccttcgacctgcac
accgatccggacagtaccgactccgacctggaccgcgcactgcgcaccctcgggttcgcc
gtcgccgacatgcggcactgcgacgacgcggccgcggcgcaggcggtgatcaccacgatc
gagcagcagcgcaacgacctggactacgacctcgacggcgccgtactgcgcctggccgac
cgtgacgccttcgccgcggccgggacccgatccagctctccgcgcggagcgctggcgtac
aagttcgccgcggaggagaagaccaccgtgctggccgacgtcgtctgggacgtcggcaag
acgggcaagatcgcgccggtggcgtggctcgagccggtcttcgtcggcggtacgacggtc
acccgcgcgacgctggccaaccaggaggtgatccgggcccggggcatcaagatcggcgac
acggtcctggtccgccgggccggcgacgtgatcccgttcgtcgccggagtgctcgacgcc
tcccggcgcaccggcgccgagcaggacatcgtgccaccgacgaactgcccgtcgtgcgga
cagcccctgaccgagcagggcaacagccgggaactgttctgcaccaacgtctcctgcccg
gcccagaccgtccgccggctgatccactgggcctcccgggccgcggccgacatcgacgcg
atcggcggggtgtggatcgagcgcctggccgaggcgggcatcctggagcacccgtcggac
ttctaccacctgaccaaggagaagctgctcgagttcgaccgcatcggcgaggtgtcggcg
gcccggatgatcgagtcgatcgacgccagccggcaggtcggcctccgccgcgcgctgatc
gggctcgccgtcccgatggcgtcggagggcaccgcggcccggctgtgccgcgcgggcttc
ggctcgctggaagaggtcgccgacgccggggaggaggggcttgtcgccgtggaggacatc
ggcccgaaggtcgccgcctctctcgtcgagcacctgtcccggcttcggcccgaactggaa
cgcctccgcgcggccggcgtctccctcgacgtgctcgaggaagacctgccaccggtcgtc
gcagccggcgctcccctggccggcaagacggttgtcgtcaccggcgccatcagcgatccc
cgttccggcgagaaggtcgcgcggccggcgttccagcgtctgtgcgagagcgccggcgcc
accatcgcctcctcggtctcggcgagcaccgactacctcatcaccggcgccgacgtcggc
gccgcgaagctcaccaaggccgagaagctgggcgtcgaggtcgtcgaccagtccgagatc
tggtcccagctgttcgccgccggcatcaccctctga
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integrated database retrieval system
