Kangiella geojedonensis: TQ33_1031
Help
Entry
TQ33_1031 CDS
T03889
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kge
Kangiella geojedonensis
Pathway
kge03030
DNA replication
kge03410
Base excision repair
kge03420
Nucleotide excision repair
kge03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TQ33_1031
03410 Base excision repair
TQ33_1031
03420 Nucleotide excision repair
TQ33_1031
03430 Mismatch repair
TQ33_1031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kge03032
]
TQ33_1031
03400 DNA repair and recombination proteins [BR:
kge03400
]
TQ33_1031
Enzymes [BR:
kge01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TQ33_1031
DNA replication proteins [BR:
kge03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TQ33_1031
DNA repair and recombination proteins [BR:
kge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TQ33_1031
NER (nucleotide excision repair)
GGR (global genome repair) factors
TQ33_1031
MMR (mismatch excision repair)
DNA ligase
TQ33_1031
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TQ33_1031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
AKE51993
UniProt:
A0A0F6RC03
LinkDB
All DBs
Position
1177407..1179422
Genome browser
AA seq
671 aa
AA seq
DB search
MTDKTDNVQKELERLRSLISDYNYQYYVLDDPSVPDSEYDRLYRELHALESKHPELITED
SPTQRVGAKPDSGFEEVIHELPMLSLDNAMDSDEMVNFNRRVNDRLAQSKDIEYVCEPKL
DGLAISLLYENGILTRAATRGDGSQGENITLNAKTIRSIPLKLRINNPPERIEVRGEVFM
LKRSFEALNEEAKATESKVFANPRNAAAGSLRQLDPQITAKRNLSFYAYSMGLVSDDFKL
ADKHYDRLLQIKDLGLPVSNEVKVVSGIEECLDYYRDILERRDALEYEIDGVVNKVNDIA
LQERLGFVARAPRWAIAHKFPAQEEVTQLLGVDFQVGRTGALTPVARLKPVSVGGVTVSN
ATLHNMDEIERLGVRVKDYVIIRRAGDVIPQVVSIIEERRPDNTLVIKAPSECPVCSSPV
ERAEGEAVIRCTGGLICSSQRNEALKHFASRKAMDIDGLGDKLVEIFSDKGFVKSISDLY
RITKEQITGLDRMGEKSADNLLVALEKSKSTTLPKFLYALGIREVGEVTAKNISNHFLTI
EAIMRARQEELESVSDVGPIVAQHLRAFFDNDDNRQQVKELMELGVHWPEIEQKSDEELP
LKDKTFVITGSFEGVSRAEIKEKLESLGAKVAGSVSKKTTALIAGEKAGSKLSKAESLGV
EVLGLEFLDNF
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgactgataaaaccgacaacgtacaaaaagagttggagcggttacgctcccttattagt
gattataactatcaatattatgttctagacgatccctctgtgcccgactcagagtatgac
cgattatatagagagcttcatgcactagagtcaaagcaccctgaattaattaccgaagat
tcaccaacgcaacgtgttggagcaaaaccagattctggctttgaagaagtcattcatgag
cttcctatgttatctcttgataacgctatggactcagatgaaatggttaacttcaatcgg
cgggttaatgataggcttgctcagtcaaaagatattgaatatgtttgcgagccaaagctt
gatgggctagcgatcagcttactctatgagaatggtatcttgactcgggctgctactcga
ggggatggttcgcagggcgaaaacattacgcttaatgctaagactattcgctcaatccca
ttaaagttacgcataaataacccacccgaaagaatagaagttcggggtgaggtttttatg
ctaaaacgttcatttgaagcattaaatgaggaagcaaaggcaacggaaagcaaggtcttt
gccaatcctcgtaatgcggcagcaggtagcttacggcaactggatccacaaatcacagcc
aaacgtaatttgtcattctatgcttactccatgggcttggtatcggatgattttaagtta
gcagacaagcattatgaccgtttgttacaaataaaagatttaggcttgcccgtttctaac
gaggttaaggttgtcagcggtattgaagaatgtcttgattattatcgcgacatcttagag
agacgtgacgccttagagtatgaaattgatggtgtcgttaataaagttaatgatattgcc
ttacaagagcgtttagggtttgtggcaagggctcctcgttgggctattgctcataagttt
cctgcgcaagaagaagtaacccagttattaggtgtcgattttcaagtaggaaggacaggt
gctttaacaccagtggccagacttaagcctgtgtcggttggtggcgtgacagtcagtaat
gccacgcttcacaatatggatgagattgagcgccttggtgttcgagtaaaagattacgtt
attattcgtcgtgccggcgatgtgataccgcaagttgtgagtatcatagaagagcgtcgc
cctgataatacccttgtcataaaagcaccgtcagagtgccctgtgtgttcatcacctgtg
gagcgtgccgagggagaggctgtcattcgctgtactggtggccttatttgctcatcacag
cgtaatgaagctttaaagcattttgcctcacgtaaagcaatggacattgatggtttaggg
gacaagcttgttgagattttttcagacaaaggctttgttaagtcgattagtgatttatat
cgtataacgaaagagcaaattacagggcttgaccggatgggggagaagtccgccgacaac
ttgttagtggctctggaaaagagtaaaagcacaacgttaccaaagtttctctatgctctt
ggcattcgtgaagttggtgaagtaacggctaagaatatttcgaatcattttttaaccatt
gaagccattatgagggcgcgacaagaggagcttgagtctgtgtctgatgttggtcctatt
gttgcgcagcacttgcgagcatttttcgacaatgacgacaatcgtcagcaagttaaagaa
ttgatggagcttggagttcattggcctgaaatagaacaaaagtctgatgaagagctacct
cttaaagataagacctttgttattactggtagttttgaaggggttagtcgcgctgaaata
aaagagaagcttgaaagcttaggtgcaaaagtggctggctcagtgtccaagaaaaccact
gcgttaatagcaggtgaaaaggcgggcagtaaactttcaaaagctgagtcgcttggtgtg
gaagttctagggttggagtttctcgacaacttttag
DBGET
integrated database retrieval system
