Novacetimonas hansenii: IFJ82_06405
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Entry
IFJ82_06405 CDS
T06979
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kha
Novacetimonas hansenii
Pathway
kha03030
DNA replication
kha03410
Base excision repair
kha03420
Nucleotide excision repair
kha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IFJ82_06405 (ligA)
03410 Base excision repair
IFJ82_06405 (ligA)
03420 Nucleotide excision repair
IFJ82_06405 (ligA)
03430 Mismatch repair
IFJ82_06405 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kha03032
]
IFJ82_06405 (ligA)
03400 DNA repair and recombination proteins [BR:
kha03400
]
IFJ82_06405 (ligA)
Enzymes [BR:
kha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IFJ82_06405 (ligA)
DNA replication proteins [BR:
kha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IFJ82_06405 (ligA)
DNA repair and recombination proteins [BR:
kha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IFJ82_06405 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IFJ82_06405 (ligA)
MMR (mismatch excision repair)
DNA ligase
IFJ82_06405 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IFJ82_06405 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
RUBY_RBDX
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QOF96631
LinkDB
All DBs
Position
complement(1453249..1455309)
Genome browser
AA seq
686 aa
AA seq
DB search
MSASQAASELALLADVIARLDRAYHQDDAPVVTDAVYDALRRRNSELEQAHPHERRDDSP
DTRVGAAPSGAFRRHRHLTPMLSLDNVFSREEFEGFISRAARFLGLDDAQATQLDFVAEP
KIDGLSISLTYENGHFVRGTTRGDGTEGEDVTANLRTLRNLPQQLHGPAPDLIEIRGEVF
LAKSDFLTLNAAQVAAGQKPFANPRNAAAGSLRQLDAEITRQRPLSLFAYAVGYCSAPVA
DTHDLYLRQLGEWGFAVSPLCTRVANEAEAEAFMERIARERSALDYDIDGVVYKINERAL
QERLGFAGRAPRWAVAWKFAAEQAITRLTKIDIQVGRTGALTPVAILEPVNVGGVIVTRA
SLHNEDEIARKDVQEGDLVRIQRAGDVIPQVLDVVLPRDHSPHPFVFPHVCPVCHAHAER
PEGEVVWRCSGGLTCPAQLVERLIHFVSRDAFDIEGLGDRTIAEFHADGLLGTPADIFHL
PTHEEAIAVRPGWGTLSARNLMNAIAARRTISLSRFIYALGIRRIGINTARLLARHYGSY
DNWHQQMLRATTVGSDERLELGSITGIGTAIADELVAFFIEAHNRQTLEDLTHVLEAITD
EEMLAAGELSGKVIVFTGTLTTMSRPEARAIAERMGARVSDSVSRKTDIVVLGEKAGSKA
RKAAELNLHTVDEAGWRSLAGLPQVS
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcatcgcaggcggcgagcgaacttgcgctgctggcggatgtgatcgcgcgactg
gatcgcgcctatcatcaggatgacgcaccggtcgtgaccgatgcggtgtatgatgcgttg
cgtcggcgcaatagcgaactggaacaggcccatccgcacgaacgccgtgacgacagcccc
gacacccgcgtgggcgcggcaccttctggcgcatttcgccgccatcgacacctgacgccg
atgctgtcgctggacaatgtgttcagccgggaggaattcgagggcttcatcagccgcgcc
gcgcgcttcctcgggcttgacgatgcgcaggccacacagctcgacttcgtggccgaaccc
aagatcgacgggctgtcgatcagcctgacctatgaaaatgggcatttcgtgcgcggcacc
acccgtggtgacgggaccgagggggaagacgttaccgccaatctgcgcacgctgcgcaac
ctgccgcagcagttgcacggccccgcccccgacctgattgaaatccggggggaagtgttc
ctggccaaatccgactttctgacgcttaacgcggcacaggttgcggcgggacagaaaccc
tttgccaacccacgcaatgccgcggccgggtcgctgcgccagcttgacgccgaaatcacg
cgccagcgtcccctgtcgctgtttgcctatgccgtgggatattgcagtgccccggtggcc
gacacccatgacctgtatctgcgacagcttggggaatggggattcgcggtcagcccgctg
tgtacgcgggtcgcgaatgaggcggaggccgaagcgttcatggaacggattgcacgcgaa
cgctccgcccttgattacgacattgacggtgtggtgtacaagatcaacgaacgcgcgctt
caggaacgccttggctttgccgggcgggcgccgcgctgggccgtggcgtggaagtttgcc
gctgaacaggccattacacgcctgacgaagatcgatatccaggtgggtcgtaccggggca
ctgacgcctgttgccattctggaaccggtgaacgtgggcggcgtgattgtcacccgcgcc
agcctgcataacgaagatgaaatcgcccgcaaggatgtgcaggaaggcgaccttgtgcgc
atacagcgcgcaggcgacgtcattccgcaggttctcgacgtcgtgctgccacgtgaccat
tccccccacccgtttgtcttcccccatgtctgccccgtctgtcatgcccatgccgaacgc
cccgaaggcgaggttgtatggcggtgctccggcggattgacgtgcccggcgcaactggtg
gagcggctgatccatttcgtgtcgcgcgatgccttcgatatcgaagggctgggtgatcgt
acgattgccgaattccacgccgacgggcttctgggcacaccggccgacatctttcacctg
cccacgcatgaagaagccattgcggtgcgtcccggatggggcacgctgtcggcgcgtaac
ctgatgaatgcgatcgcggcgcggcggacgatttcactgtcacgctttatctacgccctg
ggcatccgtcgcatcggcatcaacacggcgcgacttctggcgcgccattacgggtcgtat
gacaactggcaccagcagatgttgcgcgcgacgaccgtgggatcggacgaacggctcgaa
ctgggcagcatcaccggaatcggcactgccattgccgacgaactggtggcatttttcatc
gaggcacataaccgccagacgcttgaggatctgacacatgtgctggaggccatcacggac
gaggaaatgcttgcggcgggggaactgtcgggcaaggtcatcgtctttaccggcacgctg
acgaccatgagcagacccgaagcccgcgccattgccgaacgtatgggcgcgcgcgtctct
gacagtgtatcgcgcaagacggacatcgtcgtactgggcgaaaaggcagggtcaaaggca
cgcaaggcggcggaactgaacctgcataccgtggacgaggccgggtggcgcagccttgcc
gggctgccacaggtctcatga
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