Roseateles sp. DAIF2: G8A07_13385
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Entry
G8A07_13385 CDS
T06904
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kia
Roseateles sp. DAIF2
Pathway
kia03030
DNA replication
kia03410
Base excision repair
kia03420
Nucleotide excision repair
kia03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G8A07_13385 (ligA)
03410 Base excision repair
G8A07_13385 (ligA)
03420 Nucleotide excision repair
G8A07_13385 (ligA)
03430 Mismatch repair
G8A07_13385 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kia03032
]
G8A07_13385 (ligA)
03400 DNA repair and recombination proteins [BR:
kia03400
]
G8A07_13385 (ligA)
Enzymes [BR:
kia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G8A07_13385 (ligA)
DNA replication proteins [BR:
kia03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G8A07_13385 (ligA)
DNA repair and recombination proteins [BR:
kia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G8A07_13385 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G8A07_13385 (ligA)
MMR (mismatch excision repair)
DNA ligase
G8A07_13385 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G8A07_13385 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QPF76594
LinkDB
All DBs
Position
2940120..2942180
Genome browser
AA seq
686 aa
AA seq
DB search
MNDDPALRAAQLRELLNHHAHLYYVLDQPSLPDAEYDKLFQELQAIEAAHPQLRTPDSPT
QRVIGQVLDGFTPVTHAVAMLSIRTETDTEASGAQNFDARVRRELGLAEDAPPVEYAAEL
KFDGLAINLRYVHGQLVQAATRGNGETGEDVTQNIKTIKQIPLRLHGEVAQAAAVIEVRG
EVYMRRDDFEALNERQRAANEKTFVNPRNTAAGAVRQLDPALVRQRPLSFFAYGLGEVAG
WEVPATHSGMLDALQGFNLPVCADRAVVQGAAGLVAFHQAMGEKRDQLPFDIDGIVYKVN
SRALQQQLGFVTREPRWAVAHKYPAQEQVTRLNGIEIQVGRTGKLTPVAKLEPVFVGGTT
VSNATLHNLFELRRKGVRIGDQVIVRRAGDVIPEIVGKVEALRPAYVPNFRMPKSCPICG
SAVRREQGGIDHRCSGGISCPAQRKQAFLHFAGRRAMDIEGLGDKLVDQLVDGLIVQSLP
GLYKLGVAKLAALERMAEKSAQNIVDALEKSKTTTLPRFLFALGIRQVGETTAKDLARHF
GAMDRLMDARLEELLEVRDVGPIVAQSIRTFFDQPHNREVVEQLRAAGVHWPEGEGALGE
QGPRPLLGKTLVLTGTLPTLSRDAAKELIEASGGKVSGSVSKKTHYVIAGEEAGSKLEKA
RELGVTVLDEAGLQALLQQPGEAGET
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacgatcccgcgctgcgcgccgcgcagctgcgcgagctgctgaaccaccacgcc
catctctactacgtgctggaccagccgagcctgccggacgccgagtacgacaagctgttc
caggaactgcaggcgatcgaggcagcgcatccgcagctgcggacaccggattcgccgacc
cagcgcgtgatcggccaggtgctggacggcttcacgccggtgacccatgcggtggcgatg
ctgtcgatccgcaccgagaccgataccgaggccagcggggcgcagaacttcgacgcccgg
gtgcgccgcgaactgggcctggccgaggatgcgccgcccgtcgagtacgcggccgagctg
aagttcgacgggctggcgatcaacctgcgctatgtgcatggccaactggtgcaggcggcg
acccgcggcaacggcgagaccggcgaggatgtcacgcagaacatcaagaccatcaagcag
atccccctgcgcctgcacggcgaggtggcgcaggccgcggcggtgatcgaggtgcgcggc
gaggtctatatgcggcgcgacgatttcgaggcgctcaacgagcgccagcgcgccgccaac
gagaagaccttcgtcaacccgcgcaataccgcggccggcgcggtgcgccagctggatccg
gccctggtgcgccagcggccgctgagcttcttcgcctatggcctgggcgaggtggcgggc
tgggaggtgccggccacgcacagcggcatgctggacgcgctgcagggctttaacctgccg
gtctgcgccgaccgcgcggtggtgcagggcgcggcgggcctggtggccttccaccaagcg
atgggcgagaagcgcgaccagctgcccttcgacatcgacggcatcgtctacaaggtcaac
agccgcgcgctgcagcagcagctcggtttcgtgacccgcgagccgcgctgggccgtcgca
cacaagtacccggcgcaggagcaggtgacgcggctgaacggcatcgagatccaggtcggt
cgcaccggcaagctgacgccggtggccaagctggagccggtcttcgtcggcggcacgacg
gtcagcaacgcgaccctgcacaacctgttcgagctgcgccgcaagggcgtgcgcatcggc
gaccaggtgatcgtgcgccgcgccggcgacgtgatcccggagatcgtcggcaaggtcgag
gcgctgcgcccggcctatgtgccgaacttccgcatgcccaagagctgcccgatctgcggc
agcgcggtgcggcgcgagcagggcggcatcgaccaccgctgcagcggcggcatctcctgc
ccggcgcagcgcaagcaggcctttctgcatttcgccggccggcgcgcgatggacatcgag
ggcctgggcgacaagctggtcgaccagctggtcgacggcctgatcgtgcagagcctgccg
ggcctgtacaagctgggcgtggccaagctggccgcgctggaacgcatggccgagaagagc
gcacagaacatcgtcgatgcgctggagaagagcaagaccacgaccctgccgcgcttcctg
ttcgccctgggtatccgtcaggtcggcgagaccacggccaaggacctggcgcggcatttc
ggcgcgatggaccggctgatggacgcccggctggaggaactgctggaggtgcgcgacgtc
ggcccgatcgtcgcgcagagcatccgcaccttcttcgaccagccgcacaaccgcgaggtg
gtcgagcaactgcgcgccgccggcgtgcattggcccgagggcgagggcgcgctgggcgag
cagggaccgcggccgctactgggcaagaccctggtgctgaccggcaccctgccgaccctg
tcgcgcgacgcggccaaggagttgatcgaggcctccggcggcaaggtcagcggttcggtc
tcgaagaagacgcactacgtgatcgccggcgaagaggccggctccaagctcgagaaggcg
cgcgagctgggcgtgaccgtgctggacgaggccgggctgcaggccttgctgcaacagccg
ggcgaggccggcgagacctga
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