Kineothrix sp. MB12-C1: RBB56_15960
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Entry
RBB56_15960 CDS
T09298
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kib
Kineothrix sp. MB12-C1
Pathway
kib03030
DNA replication
kib03410
Base excision repair
kib03420
Nucleotide excision repair
kib03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBB56_15960 (ligA)
03410 Base excision repair
RBB56_15960 (ligA)
03420 Nucleotide excision repair
RBB56_15960 (ligA)
03430 Mismatch repair
RBB56_15960 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kib03032
]
RBB56_15960 (ligA)
03400 DNA repair and recombination proteins [BR:
kib03400
]
RBB56_15960 (ligA)
Enzymes [BR:
kib01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RBB56_15960 (ligA)
DNA replication proteins [BR:
kib03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RBB56_15960 (ligA)
DNA repair and recombination proteins [BR:
kib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RBB56_15960 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RBB56_15960 (ligA)
MMR (mismatch excision repair)
DNA ligase
RBB56_15960 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RBB56_15960 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
BRCT
BRCT_2
PTCB-BRCT
Lar_restr_allev
Slr4
Motif
Other DBs
NCBI-ProteinID:
WMC94534
LinkDB
All DBs
Position
3472907..3474418
Genome browser
AA seq
503 aa
AA seq
DB search
MNLPVKLREPANITFRGECVIPWDTFEEINSELEETYSHPRNLAAGTLRQLDANIAIERK
LEYYVFDIVDGFESGNLIGNYAYVADLDMPVVEHCMVRGNLKECFSKFNPENFRLPVDGL
IYRYDDTGYGKSLGATSHHPLDMLALKWQDQLYETKLTDIEWNTSKTGLINPVAIFEPVD
LDGAITTRATLHNVSYIEDLELGIGDTIQIYRSNMVIPKVHANLTKSNTWMIPDKCPCCG
GMVEIHNENGSKTLHCCNNGCGAKLLSRIVHFCSKNAINIEEMSEATVEFLINKGWVSNF
KDIYDLKQYTGEWIRCSGFGKKSVYKLLDNIEKSKNTTLDRFIYSLSVPLIGRTASKTIS
KYLSGDFEDFYDKWINNYNWALLDDFGAIMNDSMNNFVRHNFLWVKELADEFTFERQKEN
NKNSNVDLSGKTFVITGSLNTFGNRDELKELIESFSGKVSGSVSAKTNYLINNDNLSSSS
KNKKANELKVTIISEEEFLHMIK
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
attaatcttccagttaaactaagagagccagcaaacattacgtttagaggagaatgtgta
ataccgtgggacacatttgaggaaattaattccgagttagaagaaacgtattctcaccca
cgtaatcttgcagctgggacgctgagacagttagacgctaatatcgctattgaacgaaag
ttagaatactacgtgtttgatatagtagatggatttgaatctggaaatctaatagggaat
tatgcctatgtagcagatttggacatgccggttgtggaacattgtatggttagaggaaat
ttaaaagagtgttttagtaaatttaatccagagaattttagattacctgttgacggactt
atttaccgctatgatgatacagggtatgggaaatcccttggagccacttcacatcaccct
cttgatatgttggctttaaaatggcaggatcaattatatgagacgaagttaacagatatt
gaatggaacacatctaagacaggcttaataaatccggtagcaatttttgaaccagtagat
cttgatggagctattactacaagagccacactacacaatgtatcttatatagaagattta
gaattaggaattggcgacacgatacaaatttacagaagcaacatggtaatacctaaggta
catgcaaatcttacaaagagtaatacatggatgattccggataaatgtccgtgctgtgga
ggtatggtagaaatccataacgagaatggtagtaagacacttcactgctgtaataatggt
tgtggtgcaaagttgttatcgaggatagtacatttctgttcaaaaaacgccattaatata
gaagaaatgagcgaagctacagttgagtttcttataaataaaggatgggtttctaatttt
aaggacatctatgatttaaaacagtacaccggtgagtggattagatgtagcggattcggt
aagaagtctgtatataaattgcttgataatatagagaagagtaaaaatacgactcttgat
agatttatttattcactttcagtacctcttattggaagaactgcaagcaaaactatatca
aagtatttaagtggtgattttgaagacttttatgataagtggataaataattacaactgg
gcattgcttgatgatttcggtgcgattatgaatgatagtatgaataattttgtccggcac
aatttcttgtgggtaaaggaattggcagacgagttcacgtttgaaaggcaaaaggagaat
aataaaaatagtaatgttgatttatcggggaaaacatttgtaattactggttcattaaat
acttttggtaatagagatgaattaaaagagcttattgagagttttagtggaaaagtgtct
ggaagtgtaagtgctaagaccaattatcttattaataatgataatttaagcagctcatca
aaaaacaaaaaggcaaatgaactgaaagtcactattatcagtgaagaagaatttctgcat
atgattaaataa
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