Kitasatospora sp. CMC57: KCMC57_up23130
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Entry
KCMC57_up23130 CDS
T11196
Symbol
ligA_2
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kic Kitasatospora sp. CMC57
Pathway
kic03030
DNA replication
kic03410
Base excision repair
kic03420
Nucleotide excision repair
kic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KCMC57_up23130 (ligA_2)
03410 Base excision repair
KCMC57_up23130 (ligA_2)
03420 Nucleotide excision repair
KCMC57_up23130 (ligA_2)
03430 Mismatch repair
KCMC57_up23130 (ligA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kic03032
]
KCMC57_up23130 (ligA_2)
03400 DNA repair and recombination proteins [BR:
kic03400
]
KCMC57_up23130 (ligA_2)
Enzymes [BR:
kic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KCMC57_up23130 (ligA_2)
DNA replication proteins [BR:
kic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KCMC57_up23130 (ligA_2)
DNA repair and recombination proteins [BR:
kic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KCMC57_up23130 (ligA_2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KCMC57_up23130 (ligA_2)
MMR (mismatch excision repair)
DNA ligase
KCMC57_up23130 (ligA_2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KCMC57_up23130 (ligA_2)
BRITE hierarchy
Other DBs
NCBI-ProteinID:
BFV57209
LinkDB
All DBs
Position
complement(2608142..2610415)
Genome browser
AA seq
757 aa
AA seq
DB search
MAVEGWEDVPAEVRKRHAELAAEIVGHRVRYYEQDAPIVTDAEFDRLLRELEGIEAAHPV
LVTPDSPTQNVGGAPTELFAAVEHRERLLSLDNAMDDEELAAWADRVARELDGIEYHYLC
ELKVDGLAVNLTYENGQLVQAATRGDGRVGEDITPNVRTIKEIPHRLHGENVPALVEIRG
EVYLPTEAFAELNASLAAENERREKINEERAKEGKRPGALVKLFANPRNAAAGSLRQKDP
LVTASRPLHMVVHGIGAREGFDIDCQSHAYQLLHDWGLPTARHNKVVGTLDEVRDFIRQF
GEQRHSVEHEIDGVVVKVDEIPLQGRLGATSKSPRWAIAWKYPPEEVNGKLAEIKIGIGR
TGRATPYAVLEQPVKVAGSMVQYATLHNQDVVKAKGVLIGDTIVLRKAGDVIPEILGPVT
ELRPADARPFEMPTECPECGSGLRPMSEGDIDLRCPNAQGCPAQIRERIAYLGGRESLDV
EGLGYVAATALTQPLEPKQPPVGNEGDIFGLTLEQLLPIRVRVLEPKTGMPKLDDRTGEE
KVVPFFANLKGEPKKSATLLLENLEKAKDRPLWRFLNGLSIRHVGPVAAQALAREFRDLD
LIFARTEEELAAAEGVGPIIARAIKEWYEEEWHREILEKWRAAGVRFVEESTGDDGPRPL
EGLTVVVTGTLAGHTRDGAKEALTSRGAKVTGSVSKKTDFVVAGDNPGSKYDKAVQLGLP
VLDDAGFAVLLAEGPEAARAHLGIEPAEPVAESPAEG
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
gtggcggtcgagggctgggaggacgttccggcggaggtgcgcaagcgccacgcggagctg
gcggcggagatcgtcggccaccgggtgcggtactacgagcaggacgccccgatcgtcacc
gatgccgagttcgaccgcctgctgcgggagttggaggggatcgaggccgcccacccggtg
ctggtcacccccgactcgccgacccagaacgtcggcggcgcgcccaccgagctcttcgcc
gcggtcgagcaccgcgagcggctgctcagcctggacaacgcgatggacgacgaggagctg
gccgcctgggccgaccgggtcgcccgcgagttggacggcatcgagtaccactacctctgc
gagctcaaggtggacggcctggccgtcaacctcacgtatgagaacgggcagttggtccag
gccgcgacccgtggtgacggccgggtcggcgaggacatcacccccaacgtgcgcaccatc
aaggagatcccgcaccggctccacggcgagaacgtcccggccctggtggagatccgcggc
gaggtctacctccccaccgaggccttcgccgagctgaacgcctcgctggcggccgagaac
gagcgccgggagaagatcaacgaggagcgcgccaaggagggcaagcgccccggggccctg
gtcaagctgttcgccaacccccggaacgcggcggccggttcgctccgccagaaggacccg
ctggtcaccgcctcccgtccgctgcacatggtggtgcacggtatcggcgcccgcgagggc
ttcgacatcgactgccagtcgcacgcctaccagctgctgcacgactggggcctgcccacc
gcccggcacaacaaggtggtcggcaccctggacgaagtccgtgacttcatccggcagttc
ggggagcagcggcactcggtcgagcacgagatcgacggcgtggtcgtcaaggtggacgag
atcccgctccagggccggctcggcgccacctccaagtcgccgcgctgggcgatcgcctgg
aagtacccgccggaggaggtcaacggcaagctcgccgagatcaagatcggcatcggccgg
acgggccgggccaccccgtacgcggtgctggagcagccggtgaaggtggccggctcgatg
gtccagtacgccaccctgcacaaccaggacgttgtgaaggccaagggcgtgctgatcggc
gacaccatcgtgctgcgcaaggccggtgacgtgatcccggagatcctcggcccggtgacg
gagctgcggccggcggacgccaggcccttcgagatgccgacggagtgcccggagtgcggc
agcgggctgcgcccgatgagcgagggcgacatcgacctgcgctgcccgaacgcccagggc
tgcccggcccagatccgggagcggatcgcctacctcggcggccgcgagtcgctggacgtc
gagggcctcgggtacgtcgccgccaccgcgctgacccagccgctggagcccaagcagccc
ccggtggggaacgagggggacatcttcggcctgaccctggagcagctgctgccgatccgg
gtccgggtgctggagccgaagaccggcatgcccaagctggacgaccggacgggcgaggag
aaggtggttcccttcttcgccaatctcaagggcgagccgaagaagtcggccaccctgctg
ctggagaatctggagaaggccaaggaccggccgctctggcggttcctgaacggcctgtcg
atccgtcacgtcggcccggtcgccgcccaggcgctggccagggagttccgcgacctggac
ctgatcttcgccaggacggaggaggagctggccgccgccgagggggtcggcccgatcatc
gcccgggccatcaaggagtggtacgaggaggagtggcaccgcgagatcctggagaagtgg
cgcgccgccggcgtccgcttcgtcgaggagagcaccggggatgacggcccccgcccgctg
gaggggctgaccgtggtggtcaccggcacgctggccgggcacaccagggacggcgccaag
gaggcactgacctcgcgcggggccaaggtgaccggatcggtctcgaagaagaccgacttc
gtggtcgcgggggacaaccccgggtcgaagtacgacaaggcggtgcagctcgggctcccc
gtgctggacgacgcaggtttcgccgtcctgctggcggagggtcccgaggcggccagggcg
cacctggggatcgagcccgccgagccggtggctgagtctccggccgagggctga
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