Kocuria marina subsp. indica: KocCE7_09025
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Entry
KocCE7_09025 CDS
T05866
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kii
Kocuria marina subsp. indica
Pathway
kii03030
DNA replication
kii03410
Base excision repair
kii03420
Nucleotide excision repair
kii03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KocCE7_09025 (ligA)
03410 Base excision repair
KocCE7_09025 (ligA)
03420 Nucleotide excision repair
KocCE7_09025 (ligA)
03430 Mismatch repair
KocCE7_09025 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kii03032
]
KocCE7_09025 (ligA)
03400 DNA repair and recombination proteins [BR:
kii03400
]
KocCE7_09025 (ligA)
Enzymes [BR:
kii01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KocCE7_09025 (ligA)
DNA replication proteins [BR:
kii03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KocCE7_09025 (ligA)
DNA repair and recombination proteins [BR:
kii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KocCE7_09025 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KocCE7_09025 (ligA)
MMR (mismatch excision repair)
DNA ligase
KocCE7_09025 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KocCE7_09025 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
DUF7701
BRCT_2
HHH
Zn_ribbon_TFIIB
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QBJ21926
LinkDB
All DBs
Position
complement(2002310..2004595)
Genome browser
AA seq
761 aa
AA seq
DB search
MSTDNARRATDATGQSLNPDEPSEALREEYADLADRVREARTAYYVHDQPVMSDAEYDRL
YRSLEGFEALHPELKANDSPTQEVGGDVSAAFSPVKHLEKMYSLEDVFSTDELVAWLTRA
QQQVEQLPGAPTVAWLSEVKIDGLAVNLLYRNGVLVRAATRGDGTTGEDITHNVATIKTI
PQRLTGEDFPEEVEIRGEVFISSKDFRALNEAIVEEGRAPFANPRNAAAGSLRQKDPQVT
ARRPLSMFVHGIGFSRGFELETQSQAYDILRDWGLPVSPYSRVLDSMEKVLEFIAEYGEK
RHSLLHEIDGIVIKVDDRRTQFRLGYTSRVPRWAVAYKYPPEEVNTKLVDILVNVGRTGR
VTPFGLMDPVRVAGSTVEMATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEIVGPVVALRD
GTEREFVMPTECPSCGTPLRPAKEGDVDIRCPNAETCPSQLKERVNHAAGRGAFDIEALG
EEAAKALTQPVPQEAPDGTEFSVPPLRNEAGLFDLTPEDLKEVKVWRDSRRTVTDKETGE
KTQRVTPELVPYFWTKPTKNKPSVPSKTTEIMFQQMEQAKDTDLWRVLVALSIRHVGPTA
ARSLATSLRSMDAIRSADLDTLAGTDGVGPIIAQAVIEFFEEPWRCEVVDRWAAAGVRME
EEVDESTPRTLEGVTVVVTGSLEAYSRDSAKEAILKRGGKASGSVSRKTAFLVAGENAGS
KLDKAESLGVPVLDEAGFERLLAQGPSAFDDAAASHDNAGK
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacagacaacgcgcggcgggccacggacgccacgggccagagcctcaatccggac
gagcccagcgaggcactgcgggaggagtacgccgatctcgcggaccgcgtccgcgaagca
cgcacggcgtactacgtccacgaccaacccgtcatgtcggacgccgagtacgaccggttg
taccgctccctcgaggggttcgaggccctgcatcccgaactcaaggcgaacgattccccc
acgcaggaggtgggcggtgacgtctccgcggcgttcagccccgtgaagcacctcgagaag
atgtactcgctcgaggacgtcttctccacggacgagctcgtcgcgtggttgacccgcgcc
cagcagcaggtcgagcagttgccgggtgcgcccaccgtggcgtggctgagcgaggtcaag
atcgacggcctggccgtgaacctgctgtaccgcaacggcgtactcgtgcgggccgcaacg
cgtggtgacggcaccacgggtgaggacatcacccacaacgtggccaccatcaagaccatc
ccgcagcgactgaccggggaggacttcccggaggaggtcgagatccgcggcgaggtgttc
atctcctccaaggatttccgcgcgctcaacgaggccatcgtggaggaggggcgtgcgccg
ttcgcgaacccccgcaacgccgcggcgggttcgctgcgtcagaaggacccgcaggtcacc
gcacggcgaccgctgtccatgttcgtgcacggcatcgggttctcccgcggtttcgagctg
gagacgcagtcgcaggcgtacgacatcctgcgggactggggactgcccgtgagtccgtac
tcccgggtcctggactcgatggagaaggtgctcgagttcatcgccgaatacggcgagaag
cggcacagcctgctgcacgagatcgacggcatcgtgatcaaggtggacgaccgccgcacg
cagttccggctcggctacacctcccgcgtcccccggtgggccgtggcgtacaagtacccg
ccggaggaggtcaacacgaaactcgtggacatcctggtcaacgtgggtcgtaccggtcgc
gtcacgcccttcgggctcatggacccggtgcgcgtggcgggttccaccgtggagatggcc
accctgcacaaccaggacgtggtcaaggccaagggcgtgctcatcggggacaccgtggtg
ctgcgcaaggccggtgacgtcatcccggagatcgtggggcccgtcgtcgcactgcgggac
ggcacggagcgggaattcgtgatgcccaccgagtgcccgtcgtgcggcacgcccctgcgt
cccgccaaggagggggacgtggacatccgctgccccaatgcggagacgtgcccgtcccag
ctcaaggaacgcgtcaaccacgcggcgggtcgcggggccttcgacatcgaggccctgggc
gaggaagcggccaaggccctaactcaacccgttccccaggaggcaccggacggcaccgag
ttctccgtgcccccgctgcgcaacgaggccgggttgttcgatctcacgccggaggacctc
aaggaggtaaaggtgtggcgggactcccggcgcaccgtcacggacaaggagacgggggag
aagacccagcgggtcacccccgaactcgtcccgtacttctggaccaagcccaccaagaac
aagccgagcgtgccctccaagaccacggagatcatgttccagcagatggaacaggccaag
gacaccgacctgtggcgggtcctcgtggcgctgtccatccgccacgtgggtcccacggcc
gcgcgctcgctggccacgtccctgcgcagcatggacgcgatccgctcggcggacctggac
acgctcgcgggcacggacggggtgggccccatcatcgcgcaggccgtcatcgagttcttc
gaggagccgtggcggtgtgaggtcgtggaccgctgggccgccgcgggtgtgcgcatggag
gaagaggtggacgagtccaccccccgcacacttgagggagtcaccgtggtggtcacggga
tcgctcgaggcttacagccgggactccgcgaaggaggccatcctgaaacgcggcggcaag
gcgtccgggtcggtgtccaggaagacggcgttcctggtggccggcgagaacgcgggttcc
aagctcgacaaggcggagtccctcggggttcccgtgctggacgaagccggtttcgagcgc
ttgctcgcgcagggcccgtcggcgttcgacgacgccgctgcatcccacgacaacgcgggg
aagtga
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