Phytobacter ursingii: AB182_25885
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Entry
AB182_25885 CDS
T03950
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kin
Phytobacter ursingii
Pathway
kin03030
DNA replication
kin03410
Base excision repair
kin03420
Nucleotide excision repair
kin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB182_25885 (ligB)
03410 Base excision repair
AB182_25885 (ligB)
03420 Nucleotide excision repair
AB182_25885 (ligB)
03430 Mismatch repair
AB182_25885 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kin03032
]
AB182_25885 (ligB)
03400 DNA repair and recombination proteins [BR:
kin03400
]
AB182_25885 (ligB)
Enzymes [BR:
kin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AB182_25885 (ligB)
DNA replication proteins [BR:
kin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AB182_25885 (ligB)
DNA repair and recombination proteins [BR:
kin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AB182_25885 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AB182_25885 (ligB)
MMR (mismatch excision repair)
DNA ligase
AB182_25885 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AB182_25885 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
DUF3701
HHH
Cas3_C
Motif
Other DBs
NCBI-ProteinID:
AKL14493
UniProt:
A0AAC8QT42
LinkDB
All DBs
Position
4733454..4735127
Genome browser
AA seq
557 aa
AA seq
DB search
MWIRIFMMIGAVAWSACSYAACPVWTPARAEQEIALLEKQMAQWNEDYWLQGASAVSDDV
YDNLNAQLANWRRCFGQAAYDAPVLSGGTVRHPVAHTGVDKLRNKEALQMWMAGKTALWA
QPKVDGVAVTLVYRHGTLERVISRGNGLVGEDWTENARRIPALPQNVTGALANSVLQGEL
FLKREGHIQKQMGGMNARAKVAGAMMRRGGADVLNDIAVFVWSWPNGPQTLTQRLQILTQ
AGFDWVERYSVSVSNISEVETLRERWFTTALPFVTDGVVVRSAQEPDGKQWSPGQGAWVA
AWKYPPVEHVAEVKNIRFTVGRTGKIAVVAQLEPIKLDDKRVQRVNIGSVRRWQELDIAP
GDRVRISLAGQGIPRIDDVVWRGQVRDKPQPPAPVFTPLTCFYASSECQEQFLARLTWLG
SKQALDIDGLGEAGWRVLHQTHRFEHLFSWLALTKTQLQETAGITPARGLQLWHRFELAR
DRPFVRWIYAMGLPLTKSAIRAAGDTHWQQMQDRSSQAWQRLPGIGTEKARQIMAFIQDP
VIQTLAAWLGEHGIVGF
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgtggatcaggatatttatgatgatcggcgcggtggcatggagcgcatgcagttacgcg
gcttgcccggtatggacgcctgcgcgggcagagcaagagattgcactgctggaaaaacag
atggcgcaatggaatgaggattactggctacagggcgcgagcgccgtgagcgacgatgtt
tacgataatctcaacgcccagcttgcgaactggcggcgctgttttgggcaggctgcttat
gatgcgccagtgttatccggcggtacagtgaggcacccggtcgcgcatacaggggtcgat
aaactgcgtaataaagaagcgctacagatgtggatggcgggtaaaacagcgctttgggca
caaccgaaagtggatggggtggcggtcacactggtctatcgccacggcacccttgaacgg
gtgatcagccggggaaatgggctggtgggggaagactggacggagaacgcccgtcgtatt
cccgctttaccgcaaaacgttacgggcgcactggcaaacagcgttttacagggcgagttg
tttttaaagcgcgagggccacatccaaaagcagatgggcgggatgaacgccagggccaaa
gtggcgggcgccatgatgcggcgaggcggggcggatgtgttgaacgatattgccgtcttt
gtctggagctggccgaatgggccacaaacgttaacccaacgcctgcaaatattaacgcag
gccgggtttgactgggtggagcgctacagtgtgtccgtcagcaatatcagcgaggtggaa
accctccgcgagcgctggtttactactgcactgcctttcgtgacggatggtgtggtggtg
cgtagtgctcaggaaccggacggaaaacagtggagtccggggcaaggtgcctgggttgcg
gcatggaaatatccgccggtcgaacatgtcgccgaagtgaaaaacatccgctttaccgtc
gggcgtaccgggaaaatagccgtggttgcccaacttgaaccgataaagctggatgataaa
cgtgtgcagcgggtcaacattggttccgtccggcgttggcaggaactggatatcgcgcct
ggcgatcgcgtacggataagtcttgctgggcaagggataccgcgcattgatgatgtggtc
tggcgcgggcaggttcgcgataaaccgcaaccgccagccccggttttcacgccgctcacc
tgtttttatgcctcgtcggagtgccaggagcaatttctggcccgtctgacgtggctgggt
tcaaagcaggcgctggacattgacggcctgggggaggcgggatggcgggtattgcatcag
acacatcgctttgaacatctcttttcctggctggcgctgaccaaaacacaattacaggaa
accgccggaataacgcctgcaagagggctgcaactttggcatcgttttgagctggcgcgc
gaccgtccgtttgtgcgctggatttatgcaatgggtctgcctttaacaaagtcggcaatt
cgggccgccggagatacccactggcagcagatgcaggaccgaagcagccaggcgtggcag
cgcctgccgggcatcggtaccgagaaggcccgccagatcatggcatttattcaggatccg
gtgattcagacgctggcggcctggctgggtgaacatggcatcgtcggcttttag
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