Klebsiella sp. LTGPAF-6F: BJF97_21020
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Entry
BJF97_21020 CDS
T05751
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kll
Klebsiella sp. LTGPAF-6F
Pathway
kll03030
DNA replication
kll03410
Base excision repair
kll03420
Nucleotide excision repair
kll03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kll00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BJF97_21020 (ligA)
03410 Base excision repair
BJF97_21020 (ligA)
03420 Nucleotide excision repair
BJF97_21020 (ligA)
03430 Mismatch repair
BJF97_21020 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kll03032
]
BJF97_21020 (ligA)
03400 DNA repair and recombination proteins [BR:
kll03400
]
BJF97_21020 (ligA)
Enzymes [BR:
kll01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BJF97_21020 (ligA)
DNA replication proteins [BR:
kll03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BJF97_21020 (ligA)
DNA repair and recombination proteins [BR:
kll03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BJF97_21020 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BJF97_21020 (ligA)
MMR (mismatch excision repair)
DNA ligase
BJF97_21020 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BJF97_21020 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
Prok-E2_C
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AOV13375
UniProt:
A0AAN1DWU6
LinkDB
All DBs
Position
complement(4525467..4527491)
Genome browser
AA seq
674 aa
AA seq
DB search
MESNEQKLTELRTTLRHHEYLYHVMDTPEIPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAAPLASFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNTDNLTYCCELKLDGLA
VSILYENGLLVQAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPQRLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHS
ARLQQFKSWGLPVSERVKLCHTPEEVLTYYRQVEEDRPKLGFDIDGVVIKVDSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETREIVFPTHCPVCHSDVERVEG
EVVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFQLTPG
KLTGLDRMGPKSAQNVVDALEKSKETTFARFLYALGIREVGEATAAGLAAHFGTIEALEQ
ASIDDLQKVPDVGIVVATHVRNFFAEESNREVIAQLRKEGVRWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVI
DEDEMLRLLGESRG
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgaacgaacaaaaactgactgaactgcgaaccacgcttcgccatcatgaatat
ctctaccacgtcatggatacgccggaaatccctgatgcggaatacgatcggttaatgcgc
gaactgcgcgagctggaagctcagcaccctgagctgatcaccccggactcgcccacccag
cgcgtcggtgccgcaccgttagcctcttttagccagattcgccatgaagtcccgatgctg
tcgctggacaacgtttttgatgaggagagcttcctcgcgttcaacaagcgggtacaggat
cgcctgaaaaataccgataacctgacttactgctgcgagctcaagctggatggcctggcg
gtcagtatcctttatgaaaacggcctgctggtgcaggcggcgacccgcggcgatggaacg
accggtgaagatattacctcgaacgtgcgtaccattcgcgcgattcccctgaagctacgc
ggtgacaatattccgcagcggcttgaggtgcgcggagaggtgttcctgccgcaggcaggg
ttcgaaaaaattaatgaagaggcgcggcgaaccggaggtaaagtctttgctaacccgcgt
aacgcggcggcggggtctttacgccagctcgatccgcgaattaccgcgaagcgtccgctc
actttcttttgctacggcgtgggcgtgctggaaggcggcgagctgcctgccagccactcg
gcgcgcttgcagcagtttaagtcctgggggctgccggtcagcgagcgtgtaaagctctgc
catacgccagaggaagtgcttacttactatcgccaggttgaagaggatcggccgaagctg
gggtttgatatcgacggcgtggtcatcaaggtcgattcgctggcgctgcaggaacagctt
ggcttcgtagcccgcgcgccgcgctgggcggtggcgtttaagtttccggcgcaggagcag
atgactttcgtgcgcgacgttgagtttcaggtcgggcgcactggcgccatcacgccggtt
gcgcgtctggagccggtacacgtcgccggggtcctggtcagcaacgcgacgctgcataat
gctgatgaaatcgagcgtctggggctgcgtatcggcgataaggtggtcattcgccgcgcc
ggcgatgttatccctcaggtcgtgaacgtcgtgctctcagaacgcccggaggagacgcgt
gagatcgtgttccccacccattgtccggtatgtcattccgacgttgaacgcgtggaaggc
gaagtggtgacgcgctgtaccggcggtctgatctgcggcgcccagcgtaaagaagcgctc
aagcattttgtctcccgtcgcgccctggacgttgacggtatgggcgataaaatcatcgat
cagctggttgaaaaagagtacgtgcatacgccggccgatctcttccaactgacgccgggt
aaactcaccgggctcgatcgcatggggcccaaatcagcgcagaacgtggtggatgccctg
gagaagtccaaagagaccacctttgcccgtttcctttatgcgctggggatccgcgaagtc
ggtgaggcgacggcagccggtttagcggcccattttggcaccattgaggcgctggagcag
gcttcaattgacgatctgcaaaaagtgcccgatgtcgggattgtggttgccacgcacgtg
cgtaatttctttgccgaagagagcaaccgcgaagtgattgctcagctgcgtaaagaaggc
gtccgctggccggcgccggtcgtggtcaatgcggaagagattgatagcccctttgccggc
aaaacggtggttctgaccggtagcctgagtcagctctcccgtgacgatgcgaaagcccgg
ctggttgcgctgggggcgaaggtggcgggcagcgtgtcgaagaagaccgacctggtcatc
gccggggaggcggcgggctctaagcttgccaaagcgcaggagctgggaattgcggtgatc
gatgaagacgaaatgctgcgtttgctcggagagtcgcgtggataa
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