Pantoea rwandensis: LH22_08400
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Entry
LH22_08400 CDS
T03331
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kln
Pantoea rwandensis
Pathway
kln03030
DNA replication
kln03410
Base excision repair
kln03420
Nucleotide excision repair
kln03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LH22_08400 (ligA)
03410 Base excision repair
LH22_08400 (ligA)
03420 Nucleotide excision repair
LH22_08400 (ligA)
03430 Mismatch repair
LH22_08400 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kln03032
]
LH22_08400 (ligA)
03400 DNA repair and recombination proteins [BR:
kln03400
]
LH22_08400 (ligA)
Enzymes [BR:
kln01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LH22_08400 (ligA)
DNA replication proteins [BR:
kln03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LH22_08400 (ligA)
DNA repair and recombination proteins [BR:
kln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LH22_08400 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LH22_08400 (ligA)
MMR (mismatch excision repair)
DNA ligase
LH22_08400 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LH22_08400 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
DUF4874
5_3_exonuc
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AIR85489
LinkDB
All DBs
Position
1801674..1803692
Genome browser
AA seq
672 aa
AA seq
DB search
MKSVQEQITALRTSLRHHEYLYHVMDTPEIPDAEYDRLMQQLRELEAAHPDLITPDSPTQ
RVGAAPLAAFEQVRHEVPMLSLDNTFDEAGFLAFNKRVQDRLKSSDDLTYCCELKLDGLA
VSLLYEDGLLVRAATRGDGTTGENITANVRTIHAIPLRLHGDNIPARVEVRGEVFMTEAG
FEKLNEDARRTGAKVFANPRNAAAGSLRQLDPRITAKRSLTFFCYGFGLLEGGDMPASHW
QRLQQFKAWGLPVSDRIRLAHTAEEVLKFYRQVEQDRPSLGFDIDGVVIKVDSQALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVVVSNATLHN
ADEIARLGLRIGDKVVIRRAGDVIPQVVNVVESERPDNTREIVFPSHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVDALEKAKLTTLPRFLYALGIREVGEATAANLANHFGDLEKVMN
ADLDALIAVQDVGKVVAAHVRNFMEEESNREVIRELTEEVGVHWPQVEVVNIEEIDSPFA
GKTVVLTGSLSQMNRDDAKERLVALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIPV
IDEAEMIRLLGA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcggttcaggagcagatcaccgcgctgcgcacctcgttacgtcatcatgagtac
ctctatcacgtgatggatacgccggaaattccggatgcagaatatgaccgactgatgcag
caactgcgtgaactggaagcggcacaccctgatctcattaccccggattcgccgactcag
cgcgtgggcgcagcaccgctggccgctttcgaacaagttcgccacgaagtgcccatgctg
tcactcgacaacactttcgatgaagccggtttcctggcctttaataaacgcgtgcaggat
cgtctgaaaagcagcgatgatttgacctactgttgcgaactgaagctggatggtctggcg
gtcagcctgttgtatgaagatgggctgctggtgcgtgcggcgacacgcggtgatggcaca
acgggcgagaatattaccgccaacgtgcgcactatccatgccattccgctgcgtctgcac
ggcgacaatattcctgcgcgtgtcgaagtacgtggtgaagtctttatgaccgaagcgggc
ttcgagaagctcaatgaggatgcacgtcgcaccggcgcgaaagtgtttgccaacccgcgc
aacgccgcggcaggatcgctacgtcagctcgatccgcgcattaccgctaaacgttctctg
actttcttctgttacggtttcggcctgctggaaggcggtgatatgcccgccagtcactgg
cagcgtctgcagcaatttaaagcctggggtttgccggtcagtgaccgtattcgcctcgcg
catacggcggaagaggtgctgaagttttatcgtcaggttgagcaagaccgtccgtcactt
ggattcgatattgacggcgtggtcatcaaggtcgattcgcaggcgctgcaggaacagtta
ggctttgttgctcgcgccccgcgctgggccgtggcctttaaattcccggcgcaggaacag
atgacctttgtgcgcgatgttgagtttcaggtggggcgtactggcgcgattacgcccgtc
gcgcgtctggaaccggtgcaggtggctggcgtggtggtgagtaatgccaccttgcacaac
gcggatgaaattgcgcgtcttggcctgcgcattggcgacaaagtggtgattcgccgcgcc
ggagatgtgattccgcaggtggtcaacgtggtggaatccgaacgtccggataatacccgt
gaaatcgtcttccccagccattgcccggtgtgtggctcggatgtcgagcgcgtggaaggc
gaagccgttactcgttgtaccggtggactgatttgtggtgcccagcgtaaagaggcgctc
aaacatttcgtttcccgacgtgcgatggatgtcgatggcatgggcgacaaaatcatcgat
cagctggttgaaaaagagtatgtgcacacgcctgccgatctgttccgtctgacggcgggc
aagctgacggggctggatcgcatggggccgaaatcggcacaaaatgtggtggatgcgctg
gaaaaagccaagctcaccacgctccctcgtttcctgtatgcccttggcatccgtgaagtc
ggtgaagccactgcggccaatctggccaatcattttggcgatcttgagaaggtgatgaac
gccgatctggatgcgctgattgcggtacaggacgtgggtaaagtggtggccgcgcatgtg
cgcaacttcatggaagaagagagcaatcgcgaagtgatccgcgagctcaccgaagaggtg
ggcgtgcattggccgcaggtggaagtggtgaatattgaagagatcgacagtccgtttgct
ggcaagaccgtggtgctgaccggatcgctgtcacagatgaaccgcgatgatgccaaagaa
cgtttagtcgcgctgggcgcgaaagtgagcggcagcgtgtcgaagaaaacagacttactg
attgctggcgaagcagcgggttccaaactggcgaaagcgcaggagctcggtatacccgtg
atcgacgaagcggaaatgattcgccttctgggagcctaa
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