Kluyvera sp. CRP: K7B04_06020
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Entry
K7B04_06020 CDS
T08589
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
klu
Kluyvera sp. CRP
Pathway
klu03030
DNA replication
klu03410
Base excision repair
klu03420
Nucleotide excision repair
klu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
klu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K7B04_06020 (ligB)
03410 Base excision repair
K7B04_06020 (ligB)
03420 Nucleotide excision repair
K7B04_06020 (ligB)
03430 Mismatch repair
K7B04_06020 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
klu03032
]
K7B04_06020 (ligB)
03400 DNA repair and recombination proteins [BR:
klu03400
]
K7B04_06020 (ligB)
Enzymes [BR:
klu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K7B04_06020 (ligB)
DNA replication proteins [BR:
klu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K7B04_06020 (ligB)
DNA repair and recombination proteins [BR:
klu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K7B04_06020 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K7B04_06020 (ligB)
MMR (mismatch excision repair)
DNA ligase
K7B04_06020 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K7B04_06020 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH
RNA_ligase
DUF3701
Motif
Other DBs
NCBI-ProteinID:
UAK21432
LinkDB
All DBs
Position
1294961..1296637
Genome browser
AA seq
558 aa
AA seq
DB search
MKAWMMGLGWLLVMQVQASCPVWSAARAEQEIAQLQGQIAKWNADYWRQGVSGVSDGVYD
QLTARLAQWQHCFGAKPVESTSLPPLHDALKHPVAHTGVRKLADARAVEQWMQGKGELWV
QPKVDGVAVTLVYRHGQLYQAISRGDGLVGEDWTDKVRQIPSLPKTVQGALANSVLQGEI
FLRAGGHVQRKMGGMNARAKVAGMLMRQGKREPLSALSLFIWAWPDGPAAMSERLAQLSA
SGFELAQRYSHRVSRVQEVANWREHWLTTPLPFATDGIVIRQAKEPAGAYWQPTQGTWVA
AWKYEPVAQVAQVNGIHFSIGRSGKVSVVAELEPVKLDDKLVRRVNVGSVARWRRLDFTV
GDQLLVSLAGQGIPRLDSVVWRGQDRTKPNPPQGEYHSLTCYFLTDGCRAQFLARLNWLS
SPQVFNLEGLGDAGWNRLMMALPFDHLFSWLEWQAAQLKAIPGIAPERAEQLWHRFDMTR
RQPFRLWVKALGTPLPETALQASGDTSWRQISARDELAWQKLPGIGRERARRLVTFFHHP
TIVALADKLHTLGVVGFD
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcatggatgatgggcctggggtggctgctggttatgcaggtgcaagccagctgt
ccagtctggtctgccgcgcgggccgagcaagagattgcgcagctacaggggcaaatagca
aagtggaacgccgattactggcggcaaggcgtcagcggggtgagcgacggcgtctatgac
cagcttactgctcggctcgcacagtggcagcattgctttggtgcgaaacccgtagagagc
acgagtttgccgccattacacgacgcgcttaagcatcctgtcgcccataccggagtacga
aaactggcggatgcgcgggccgtagagcagtggatgcaaggcaaaggtgaactgtgggtg
cagccaaaagttgatggcgttgcggtaacgctggtttatcgccatgggcagctttaccag
gcgattagtcggggtgatggtctggtgggggaagactggacggataaggtcaggcagata
ccgtcgttgccgaaaacggttcagggggctctggcaaatagcgttttacaaggcgagatc
tttttacgcgccggggggcatgtgcagcgcaaaatgggcggcatgaacgcccgtgctaag
gtggcgggtatgttaatgcgacaaggcaaacgtgagccactgtcggcattatcgctgttt
atctgggcatggccggatggtccggcggcgatgtctgaacggctggcgcagctgtctgcg
tctggatttgaacttgcccagcgctactctcatcgtgtttctcgtgttcaggaggtggcg
aactggcgcgaacattggttaaccacgccgttaccctttgcgactgatggcattgtgatc
cggcaggctaaagaacccgcgggcgcgtactggcagcccacgcagggaacctgggtggca
gcatggaaatacgagccggtggcgcaggtcgcgcaggtgaacggtattcacttttcgata
gggcgtagcggcaaggtctcagttgtcgcagagcttgaaccggtaaagctggatgacaag
ctggtgaggcgggtgaatgtgggctccgttgcacgctggcgacgtttggatttcaccgtg
ggcgatcaactgctggtgagcctggcaggtcaggggattccccggctggatagtgtggtc
tggcgtgggcaggatcgaacaaaacctaatcctccgcagggggaataccattcgctaacc
tgttatttcctcacggatggctgtcgggcacagtttctggctcgcctgaactggttgtct
tcaccacaggtttttaatctggaaggtttgggagacgctggctggaacaggctgatgatg
gcgttaccgttcgaccatcttttttcctggcttgaatggcaggcggcccaactaaaagcg
ataccggggatagcgccagaacgcgccgaacagctatggcaccgttttgatatgacgcgg
cgtcagccttttcgactgtgggtcaaggcgttgggcacgccattgcccgagacggcgctg
caggcatccggcgatacttcgtggcggcaaatttcagcgcgcgatgagctggcctggcaa
aagctaccgggcattgggcgagagagggcccgccgcctggtgacctttttccaccacccc
acgatcgttgcgcttgccgacaagctacatacgctgggcgtggtgggatttgattag
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