Koleobacter methoxysyntrophicus: H0A61_00062
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Entry
H0A61_00062 CDS
T07090
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kme
Koleobacter methoxysyntrophicus
Pathway
kme03030
DNA replication
kme03410
Base excision repair
kme03420
Nucleotide excision repair
kme03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H0A61_00062 (ligA)
03410 Base excision repair
H0A61_00062 (ligA)
03420 Nucleotide excision repair
H0A61_00062 (ligA)
03430 Mismatch repair
H0A61_00062 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kme03032
]
H0A61_00062 (ligA)
03400 DNA repair and recombination proteins [BR:
kme03400
]
H0A61_00062 (ligA)
Enzymes [BR:
kme01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H0A61_00062 (ligA)
DNA replication proteins [BR:
kme03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H0A61_00062 (ligA)
DNA repair and recombination proteins [BR:
kme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H0A61_00062 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H0A61_00062 (ligA)
MMR (mismatch excision repair)
DNA ligase
H0A61_00062 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H0A61_00062 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QSQ07746
UniProt:
A0A8A0RKH8
LinkDB
All DBs
Position
complement(74334..76349)
Genome browser
AA seq
671 aa
AA seq
DB search
MAKDEAEKKIKALREQINYHNKLYFEHDSPEISDSEYDGLMRELKRLEEEFPELVTPDSP
TQRVGGRPLEAFDTVMHSVPMLSLANAFDEGELKEFHRRVTSAVGEEVEYVAELKIDGLA
VALIYENGVFTRGATRGDGIVGEDITQNLKTIKTIPLKLSDYNGQIPFIEVRGEVYIPKK
EFERLNEEREKAGLSLFANPRNAAAGSLRQLDPRITASRPLNIFVYGTGRIDGIEVSTHL
EMLELLKKMGFRVNPNVSVFRRIDDVISYCERWVEQRGRLPYDIDGIVIKVNSLEHQRLL
GATSKSPRWAIAYKFPAEQKTTVIKDIIVRVGRTGVLTPTAVLEPVRIAGSTVTKATLHN
EDYIRQKDIKIGDTVVVKKAGDVIPEVVEVVFNKREGSERDFVMPQKCPECGSDVVRFEG
EAAAKCTGIACPAQLKRGIIHFASRDAMDIEGLGPAIVNQLVDRGLVKDAGDLYFLKVDD
LIPLERMGEKSASNLINAIERSKTNPLEKLIFALGIPFIGSRAASILAERFRALDNLMNS
TYEELVQIPEMGPKMAQSVITFFKQEQTKNIIRKFKRAGLNLETAGRKNRDEGAALNGIT
FVLTGSLEKYTRKQAQDIIEKFGGRVSSSVSSKTDYVLAGKDPGSKLEKAKELGIKIIDE
EEFERMLEISQ
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagatgaagccgaaaagaagataaaagcattaagggagcagataaattaccat
aataaactgtattttgaacacgacagcccggaaatatcggattcggaatatgacgggtta
atgagggagcttaagaggctggaagaggaatttccggaactggttacccccgattctcca
acccagcgggtgggcggaagacccctggaagcctttgatactgtcatgcattcggtcccc
atgctcagcctggccaatgcctttgatgaaggcgaactgaaggagtttcaccgcagggtt
acttcagctgtcggtgaagaggttgagtatgtagcggagctgaaaatagacggcctggcc
gttgcccttatttatgagaacggggtatttaccagaggagctacccgcggtgacggcatt
gtaggggaagatataacccagaacctgaagaccattaaaaccataccgctgaagttgtct
gattataatggccagattccctttattgaagtaaggggagaagtatatattccgaagaag
gaatttgaaaggctgaatgaggagcgggagaaagcagggctttccctttttgccaacccc
aggaatgcagcggccggttccctgcgtcagctggacccgaggattactgcttcaagaccc
ctgaatattttcgtctacggtacaggcaggatcgatggaatagaggtcagcacccactta
gaaatgcttgaattgttgaaaaagatggggtttagggtaaatccgaatgtatcagtgttt
aggagaatagatgatgtaatttcctattgtgaaaggtgggtcgagcagagaggccggctt
ccctatgatatagacggcatcgtgataaaggtcaattctctggaacatcagaggcttctt
ggggctaccagcaagagccccagatgggcgatagcctataaatttccggcagagcagaaa
acgacggttatcaaggatattatcgtaagggtaggcagaacaggtgtccttacacctacc
gccgttttagagcctgtaaggatcgccggatcaacggtaactaaagcaaccctgcataat
gaggattatataagacagaaggatataaagatcggtgacacggtagtggttaaaaaggca
ggagatgttatccccgaggttgtggaggtagttttcaacaaaagggagggcagtgaaagg
gactttgtaatgcctcaaaaatgcccggaatgtggaagtgatgtggtaagatttgaaggt
gaagctgctgctaaatgcaccggtattgcatgtccggcccagttaaagagggggattatc
catttcgcttcaagggatgccatggatatagaggggctggggcccgccattgtcaatcag
cttgttgacaggggtctggttaaagatgccggggacctgtatttccttaaggttgatgac
ctgattcccctggaaaggatgggggaaaagtcggccagcaatcttatcaatgccatcgaa
agaagcaaaaccaacccgctcgaaaagctcatatttgctctggggattccgtttatcggt
tcaagggctgcttccattctggcagaaaggttcagggctttagacaatctgatgaattcc
acttatgaggagctggttcagatacctgaaatgggtcccaagatggctcaatccgttata
acgttcttcaaacaggaacagaccaagaacattatccggaaattcaaaagagcgggctta
aacctcgaaaccgcagggagaaaaaaccgggatgaaggcgcagcccttaatgggattact
tttgtccttacgggttcccttgaaaaatatacaagaaaacaggcccaggatataatcgag
aaattcggagggcgggtatcgtcttcagtaagcagtaagaccgattatgtccttgcgggc
aaagaccccggttcaaagctggaaaaggccaaagaactgggtattaaaataatagatgaa
gaggaatttgaaaggatgttagaaatatcacagtaa
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