Klebsiella michiganensis RC10: VW41_16230
Help
Entry
VW41_16230 CDS
T03782
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kmi
Klebsiella michiganensis RC10
Pathway
kmi03030
DNA replication
kmi03410
Base excision repair
kmi03420
Nucleotide excision repair
kmi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VW41_16230 (ligA)
03410 Base excision repair
VW41_16230 (ligA)
03420 Nucleotide excision repair
VW41_16230 (ligA)
03430 Mismatch repair
VW41_16230 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kmi03032
]
VW41_16230 (ligA)
03400 DNA repair and recombination proteins [BR:
kmi03400
]
VW41_16230 (ligA)
Enzymes [BR:
kmi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VW41_16230 (ligA)
DNA replication proteins [BR:
kmi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VW41_16230 (ligA)
DNA repair and recombination proteins [BR:
kmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VW41_16230 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VW41_16230 (ligA)
MMR (mismatch excision repair)
DNA ligase
VW41_16230 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VW41_16230 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
Prok-E2_C
DZR_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AJZ90454
LinkDB
All DBs
Position
complement(3520672..3522690)
Genome browser
AA seq
672 aa
AA seq
DB search
MDSIEQQLNHLRTTLRHHEYLYHVQDNPEIPDAEYDRLMRELRALEEAHPELITQDSPTQ
RVGAAPLSEFTQVRHEVPMLSLDNVFDEASYLAFNKRVLDRLKSSDALTFCCELKLDGLA
VSLLYEDGVLVRAATRGDGTTGENITANVRTIRAIPLKLQGDNIPRRLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPASHM
ARLQQFKAWGLPVSDRIRLCSTPEEVLAFYHQVEADRPTLGFDIDGVVIKVDSLALQETL
GFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDRVVIRRAGDVIPQVVGVVETERPENTQEIIFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVATPADLFTLSAG
KLTGLDRMGPKSAQNVVDALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLDALIS
ASIEELQKVPDVGIVVATHTFNFFAEESNRDVIRQLTEEAGVHWPAPVVVKAEEIDSPFA
GKTVVLTGSLSILSRDEAKDRLTALGAKVAGSVSKKTDLVIAGEAAGSKLVKAQELGITV
IDEAEMIRLLGD
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggactcaatcgaacaacaacttaatcacctgcgaaccacgcttcgccatcatgaatat
ctgtaccatgtgcaggataatcccgaaattcccgatgcggaatatgaccggctgatgcgc
gaactccgtgcgcttgaagaagcgcacccggaactcattacccaggattcaccgacccag
cgagtcggggcggcgccgctgagtgagtttacccaggtgcggcatgaagtgccgatgcta
tcccttgataacgttttcgacgaagccagctacctggcgtttaacaaacgcgtgctggac
aggctgaaaagcagcgatgccctgacgttttgctgtgaactaaaactggatggcctggcg
gtaagtctcctgtatgaagacggggttctggtgcgggccgcgacccgaggggatggcaca
acgggtgaaaacatcactgctaacgtccggaccattcgcgcaatacctctcaaacttcag
ggggacaatattcctcgtcgtcttgaagtgcggggcgaagtcttcttgccgcaggcaggt
ttcgaaaaaattaacgaagaggcgcgccgcaccggcgggaaagtatttgctaacccgcgc
aatgctgcggctggttcgctgcgccagctagatccccgtattaccgctaagcgcccgctg
accttcttctgctacggcgtggggctgctggagggcggtgaactgccagccagccacatg
gcgcgtttgcaacagtttaaggcctggggattgccggtcagcgaccgcattcgcctgtgc
agcacgccggaagaggtgctggcgttttatcatcaggtagaagccgatcgcccaacgctg
ggcttcgatattgacggcgtggttatcaaagttgactcgcttgcgctgcaggaaacgctg
ggttttgtcgcgagagcgccgcgctgggccgttgcgttcaagttcccggcacaggaacag
atgaccacggtgcgtgacgtggagttccaggtaggacgtactggcgcaatcacgcccgta
gctcgcctggagccggtgcaggtcgccggggtgctggtgagtaatgcgacgttgcacaac
gccgatgaaatagagcgtcttggcctgcgcataggcgacagagtggttatccgtcgggcc
ggggatgttatcccgcaggttgttggcgtggtggaaacggagcgcccggagaatactcag
gaaatcatcttcccgacgcattgcccggtttgtggttcagacgttgagcgagtagaaggt
gaggccgtcgcccgctgtaccgggggcctgatttgcggtgcccagcgcaaagaggcgctg
aaacactttgtgtcccgccgggcgatggacgttgacggcatgggagacaaaatcatcgat
caactggtggaaaaagagtatgtcgccaccccagccgatctgtttacgctgtcggcgggc
aagctcaccgggctggatcgtatggggcctaaatctgcgcaaaacgttgttgatgcgttg
gaaaaagccaaagagacgacttttgcacgcttcctgtatgccttaggcatccgtgaagtc
ggagaagccaccgccgcagggctggcagcgcacttcggtacgctggatgcgcttatctcg
gccagcattgaggaactgcaaaaagtgccggatgtcggcattgttgtggcgacgcacacc
tttaacttctttgctgaagagagcaaccgggatgttatccgccagcttaccgaagaagcc
ggggttcactggcccgcgcctgtggttgtcaaagcggaagaaatcgatagcccgtttgct
ggaaaaaccgtggtgcttaccggctcgctgagtattctttcccgcgacgaagccaaagac
cggctgacggcgctgggcgcaaaagtagccggcagcgtgtcgaaaaaaaccgatctggtt
attgccggagaagcggcgggctccaagcttgttaaggcgcaggagctgggtattacggtt
atcgatgaagcggaaatgattcgtttactgggtgactaa
DBGET
integrated database retrieval system
