Kryptolebias marmoratus (mangrove rivulus): 108230468
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Entry
108230468 CDS
T05608
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X2
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
kmr03036
]
108230468 (smchd1)
03400 DNA repair and recombination proteins [BR:
kmr03400
]
108230468 (smchd1)
Chromosome and associated proteins [BR:
kmr03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
108230468 (smchd1)
DNA repair and recombination proteins [BR:
kmr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
108230468 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
HTH_NDX
Csm1_N
Motif
Other DBs
NCBI-GeneID:
108230468
NCBI-ProteinID:
XP_017262228
LinkDB
All DBs
Position
LG21:complement(13519058..13540573)
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AA seq
1957 aa
AA seq
DB search
MIRVYDCRSESREIRKITVDTRSLNLNGFLQVVRKNFAIASHELFVLVTTDRTVVDSNKF
EELQDGCTLYLLRHSGQALPAATQEDINFVPHYNTLIESGTYEYFAEGQKSLPCSLAELV
DNALSATANNRETRTIEIRMLFDKVFGKPAVIVLDNGCGMTSKQLNNWARYRLSKFAREN
STFESEKEKYVRPAPIPRSLNSDISFFGVGGKRAVFHIGDSVRMICKPADFPDVHELVLS
KEEFKKKEQNKEDVYKGTILNRKPGDSSHVTDDERFLRDVIAEETGKESFTAVVITGVCP
EHIDYLKQHFDGWTRELAHIYHYYIHGVDGNDLRSSCKKSDNSEVKIDILVTLREKPPKS
PRVKNLREVADDMQSLYINAAASKFEFGAFTSNGGRVDGVVRYHPFLYDRETYPRDPYAA
LAPVDDDDFENESGSLNQARGKRDIFECYWNGRLIPYTTVSEFDWCSRPVKGATLPEECY
FRISGVLFTNDKFLVNASKLKFMDLELKLKSKETIFSPGSNPQPSKRGNIQKEFTQWLQN
CHEKCDKQVKFLSYIETITRTDMSTKRLQHPWAAFSSIELDGKIYKTGQVVKSQKTLPIL
YGSVVRFLLHGTHDCDVYATGGQVEIRREPKALYDKVTKIIPISKIDRTVTDESIMKHIE
SDIDKLPEKLSVTWPEGNVWPKNAVCPAGSPFGPLKVEILNRNGHPISSRINTGGQKMGI
KLSILFKIIHHGLKGDKEVVCLVAPYVAANQGHWFRKIETLTNLGSYTLKLNTVLNEGGS
TVYGDKQLPSFELKFTVKEGAAESFTVGALSSTLRVGVPFNIPLQIKDRYKHPTAPPPTL
QPVLECSDLELTYESVICNGTTFIIKGVKAKGKVQNYQQSKSYDLKVSLPGLKNDMQTIP
VSLLPGSPHSLHVKPDTDPIKVENGNQAAFNVEVHDVAGNITANPKQIVRCQIPGLPLVV
ADCSSSGAGQLMTKSINVIIKNGEPHMLKAEFDLPSMKHIAPVVINLKVMPSSRISQLKL
FCQGEEKLELKNEDRIEWQAGGLLQNLFYKLYDESVADVRITAEIASSIKVNWTPDVNQR
SLVGGRLPDVQVPTQAMEEHFYQVSYQDLSSSFTIVPLPDEPARLKATLPQNTLKLGEVF
SGHITLELVDQYDNVTRGLTPACVKSMTVEAEGLDASSITFKWQESSSSVAVTGVRFHSG
SLGPREICFNYSTYTERVIVKLTAGVPSQLKLVSGPEQPLQILNGHGIPTPFLVQLCDEW
GNPSPDQRVVVELRSTIKVSTNVMSQPVDAEGKASFTVNGVKGTKGYYQLEFRGSFNSKP
IPGPSVNLTVIPDPNKPAQLQVNYNTSATFCAGGTFPVFSVMVVSDEGSPITTFNPADLS
MLLWEGVSSPSTSGITELKCNKPMENENKDRFYFRNKPIPERAGKHTIQFLLRFDQTEVL
HGAKMIINVVANQAVKLGPGSQPPTPAVSYSTDISSRVLVENMTLKIMDKFGNSAGHNLN
GKVVVSIRCADEQSRSLPLFEGKTSTVQMSLNKGSVHINRLAIMENSPGENGIRYIVVLK
AEVPICASSLAPFELPFHFYNDVDNRRKMAELSRKKDELSAAVARNEKTRHTLMELRGAL
TTQVQNTYNKESALKDELNRINVRITQSLPIQDIENLLKEKTAEVERIDKMPRRVCSISN
NFSGPDVIGMVGHLAFISDNDAAAVISWQLGSDMDCVITRTTEAANRIHHDSAGTQQVMA
FDSIFVQQGDRSLPHISNGHKLFDPPGHPVYAKDLLIFPHEQQKCKIVFKTLLGNTILMD
DLDSATAYRKEVVRNKIYCPTILTRKGHRVDSRGKFGGVQNRAPPIHKLKVLGAPLPRHY
YLLKEQIDVLCQYRSAVVKREQAESDLNNHLASLNSPQMNQKEREIEEIKRQLEDIDRQL
ASATVRQGKRGPENTGEPSGVVTKRPRQTPRDPPLGF
NT seq
5874 nt
NT seq
+upstream
nt +downstream
nt
atgatccgtgtttatgactgccgctccgaaagcagggagattcgcaagataactgtggat
acaaggagcttgaacctgaacggctttcttcaagttgttcgcaagaactttgctatcgct
tcacatgagctgtttgtgttggtcacaaccgacagaacagttgtggattctaacaaattt
gaggagcttcaggatggctgcaccctttacctgttacgacattcaggccaagccctgcca
gctgcaactcaagaggacatcaattttgtgcctcattacaatacgctgatcgagagcggg
acttacgaatacttcgccgaggggcagaaatcactgccatgctctcttgctgagctggtg
gacaacgctctttctgccacagccaacaacagggaaacgaggaccatagagatacggatg
ctgtttgacaaagtttttggaaaacccgcagtcattgttttggataatggctgtgggatg
acctcgaagcagctcaataactgggcaaggtacagactctctaaatttgcgagggaaaat
agcacatttgaaagcgaaaaagagaaatatgttcgtcctgctcccatacctcgaagtctc
aacagtgatatatccttctttggagttggaggaaaacgggccgttttccacatcggggac
tcagttagaatgatctgcaaaccggcagacttcccagatgttcatgagctggttctttca
aaggaagaattcaagaaaaaggagcagaacaaagaggatgtttacaaagggaccatctta
aacaggaagcctggcgactcttcacacgtgacggacgacgagcgcttcctccgcgacgtc
atcgctgaggaaacggggaaggaaagcttcactgctgtcgtcatcacgggagtctgccct
gagcacatcgactacctgaaacaacattttgacgggtggaccagagagctagcgcacata
tatcactactacattcatggagtcgatggaaatgacctgagaagcagctgtaaaaaatca
gataattctgaagtaaaaattgacattctggtaactttacgagagaagcctcctaaaagc
ccgcgtgtgaagaatctccgagaagtggcagacgacatgcagagtctgtacatcaacgct
gctgcatccaagtttgagttcggggcctttacctcgaacggaggccgtgtggatggggtc
gttcgctaccacccgttcctctacgacagggagacttaccctagagatccctacgctgcg
ctagcccctgttgatgatgacgactttgaaaacgagtctggcagcctgaatcaagcaaga
gggaaaagggacatttttgaatgttattggaacggtcggctcatcccttacaccacagtt
tctgagtttgattggtgctctcgacccgttaaaggtgcaactttacctgaagagtgttac
tttcggatttccggggtgctttttaccaatgacaaatttctggtcaatgctagcaagctg
aagttcatggacctggagctgaaactgaagagcaaagaaaccatattcagtcctggtagt
aaccctcagccatcaaaaagaggtaacattcagaaagagttcacgcagtggcttcagaac
tgtcacgaaaagtgtgacaagcaggtgaagtttctcagctacatcgagacaataacacga
acagatatgtcgaccaagagactgcagcatccctgggcagcgttcagctccatcgagtta
gatggaaaaatatacaagacgggacaagttgtgaagtctcagaaaacgctgccaattctt
tacggcagcgttgtgcgatttttgctgcacggaactcacgattgcgacgtctacgccaca
ggagggcaagtggaaatcagacgtgagcctaaagcactttatgacaaggtcacaaagatc
atacccatttcaaagatcgacaggaccgtcactgacgaaagcatcatgaaacacatcgag
agtgatatcgacaagcttccagaaaagctaagcgtgacctggccggaagggaacgtttgg
ccgaaaaatgctgtttgtcccgctggtagtccttttgggcctctcaaggttgaaattctc
aacaggaacggacacccaatctcctccaggataaatacaggtggccaaaagatggggata
aaactgagcattctcttcaaaataattcatcacggtcttaaaggagacaaggaggttgtc
tgtttggttgctccgtatgtagcagcaaatcagggacactggttcagaaaaattgaaact
cttaccaacttggggagttacacactgaaacttaacacagtgttaaatgaaggtggttcc
actgtctacggtgacaagcaactcccgagcttcgagctcaaattcactgtcaaagagggc
gcagcggagagcttcactgtgggcgcgctgagctccactcttcgtgtgggagtaccattc
aacattcctctgcagataaaagaccgctacaaacacccgacagcccctcctcccacgctc
cagcctgtgcttgaatgcagtgacctggaattgacttatgagtcggtgatctgcaatggg
accacatttatcataaaaggtgtcaaagcaaaaggaaaagtccagaattaccagcaatcc
aagagttatgacctgaaagtgtcactgcctggtttgaaaaatgatatgcaaactattcca
gtcagtctgcttcctgggagtccacattcacttcacgtgaaaccagacacagacccaatc
aaagtggagaatggaaaccaagccgcttttaatgttgaagtccacgacgtggccggaaac
atcaccgcaaaccccaaacagatcgttcgctgtcagattccagggcttcccttggtggtg
gcagactgcagcagctcaggagcagggcagctgatgactaaatccataaacgttattata
aaaaacggggagccacacatgcttaaagctgaatttgacctgcctagtatgaagcacata
gcgccagtcgtgataaatctgaaggtcatgcccagcagtcggatctctcagctgaagctc
ttctgtcagggggaggaaaagctggagctgaagaacgaagacaggattgagtggcaagca
ggaggactgctgcagaatctgttttataagctctatgatgagtctgtggccgatgtgcga
atcacggctgaaatagcctccagtattaaggttaactggacaccagatgttaaccagaga
agtttggtcggggggaggctgcctgatgtacaggttcccacccaggcgatggaagagcat
ttctaccaggtgtcctaccaggacctcagttccagcttcaccatcgtgcctcttccggat
gaaccagcccggctgaaagcaactctgccccagaacacactgaagcttggtgaagtcttc
tctgggcacatcactttggagctcgtggaccagtatgacaacgtgaccagggggctgacc
cccgcctgtgtgaagagcatgaccgtggaggctgagggtctcgacgcatcaagcatcacc
ttcaaatggcaggagagcagcagttcagttgcagtgactggagttcgtttccactccggg
tctctcgggcccagagagatttgcttcaactacagcacgtatacagaacgcgtcatagtt
aaactgactgcaggagtcccctcacagctgaaactggtcagcggacctgagcagcctttg
cagatcttgaacggtcacggcatccccacaccgttcctggtccaactctgcgatgagtgg
ggaaacccgtctccagaccagagagttgtggtcgaattaaggtcgacaataaaggtatca
acaaatgttatgtcccagcctgttgacgcagaaggaaaggcctctttcacagttaatggt
gtgaaaggtacaaaagggtactatcagctggagtttagaggttcctttaacagtaaaccc
atccctggtccatcagtgaacctcactgtcatccccgatcccaacaaacccgcccagctg
caggtgaactacaacaccagtgccactttttgtgctggaggcactttccctgtgttctct
gtgatggtggtgtccgacgaaggaagtccgattacgacctttaaccccgctgatctgtcc
atgctgctgtgggagggcgtgtcatcgccgagcacatcagggatcactgagctgaagtgc
aataaacccatggaaaatgagaataaagaccgtttttactttagaaataaaccgatcccg
gaacgtgctgggaagcacaccatccagtttttgctgcgttttgaccaaacagaagttctg
cacggtgctaagatgatcataaatgttgtggccaatcaggctgtcaaactgggacctggc
tctcagccaccgacccctgccgtttcctacagtaccgacatctccagccgagtcctggtt
gagaacatgaccctgaagataatggataagtttggtaattcagccggtcacaacctgaac
gggaaggtggttgtctctataagatgtgcggatgaacagagcagaagcctccctctgttt
gaggggaaaacgagcaccgttcaaatgagcttaaacaaaggaagtgtccacattaataga
ctggcgatcatggagaacagccccggtgagaatggcattagatacatcgtcgtcttaaaa
gccgaagtgccgatatgtgcctcgtccctggctccttttgagcttcccttccacttttac
aacgatgttgacaatcgaagaaaaatggccgaactgtcgaggaagaaggacgagctgagc
gccgctgtcgctcgaaacgaaaaaacgcgtcacacgttaatggagctccggggtgctttg
acaactcaagttcagaacacgtataataaggagtcggccctgaaagatgagctgaacaga
ataaacgtgaggattacacagtctttacctatccaagatattgagaacttactgaaagag
aagacggctgaagttgaaaggattgataaaatgcccaggagagtctgcagcatctccaac
aacttcagcggcccggatgttattggaatggtgggccacctggccttcatttcggataat
gatgctgcggcggtcatctcctggcagctggggagtgacatggactgtgtgatcaccaga
acgacagaagcagccaacaggattcaccacgactctgcgggcactcagcaggtcatggcc
tttgacagcatctttgtgcaacaaggagacagatcgctgccacacataagtaacggccac
aaacttttcgatcctcctggacacccggtttacgccaaggacttgctgattttcccgcac
gaacagcagaaatgtaaaatcgtctttaaaaccctccttggaaacactattctgatggac
gacctggattctgcaaccgcctacaggaaggaggttgtgaggaacaaaatctattgtccc
accatactgacccgaaaggggcacagggtcgactccaggggtaaattcggaggtgtgcaa
aacagagccccgcccattcacaaattaaaagtgttgggcgcaccgcttccccgtcactac
tacctgctgaaggagcagatagacgtgctctgtcagtaccgctcggctgtggtgaaacga
gaacaggcagaaagtgatctgaacaatcacttagcatcgctgaattcaccccaaatgaac
caaaaggagcgagaaattgaggagataaaaaggcagcttgaggacattgacagacagctt
gcatcagcgacagtcagacaagggaaacgaggtcctgagaacaccggagaaccgtcaggc
gtcgtgacaaaaagaccaaggcagacgcccagagatcctccactggggttttaa
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integrated database retrieval system
