KEGG   Kryptolebias marmoratus (mangrove rivulus): 108233243
Entry
108233243         CDS       T05608                                 
Symbol
apaf1
Name
(RefSeq) apoptotic protease-activating factor 1 isoform X2
  KO
K02084  apoptotic protease-activating factor
Organism
kmr  Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04115  p53 signaling pathway
kmr04210  Apoptosis
kmr05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:kmr00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    108233243 (apaf1)
   04115 p53 signaling pathway
    108233243 (apaf1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    108233243 (apaf1)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz NB-ARC APAF1_C Beta-prop_EML_2 EIF3I Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WDR55 APAF-1-like_WHD Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_EML WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_WDR75_1st CARD Beta-prop_RIG_2nd Beta-prop_HPS5 Beta-prop_TEP1_C RMC1_N PEP5_VPS11_N Beta-prop_WDR19_1st Beta-prop_NWD2_C Beta-prop_EIPR1 Beta-prop_WDR35_TULP_N CARD_2 Ge1_WD40 AAA_16 WDR54 PQQ_2 NPHP3_N WD40_RFWD3 Beta-prop_SPT8
Other DBs
NCBI-GeneID: 108233243
NCBI-ProteinID: XP_017267042
UniProt: A0A3Q3A889
LinkDB
Position
LG18:complement(10078436..10119735)
AA seq 1257 aa
MVLEERARSSLLRLRNKLEQDIKPPCLMDHMITDGAMTGDEEEKIMTQPNRKDQAAALLN
LLLRKDNCSYISFYNALVKEGYNDLACLLRADLPHVSSEVHNGSSGHSTSYVQAMLSEGG
VPQRPVVFVSRQELINQVRLKLYQLQNDSGWVTIYGMAGSGKSVLASEAVRHPQLIKECF
PGGIHWLSVGQLDKPDLLVKIQSLCFRLDQSLDEKSLPPNSLDLAKERLRFLMLRKYPRS
LLILDDIWDSSVLKVFDVQCRVLLTTRNRSIADSVGGVKHEVEVESGLDEKKALEILALY
TEKKPQTLPEEARDIVRECKGSPLVVSLVGALLKEKPNRWLYYLRQLQQKKFKRIRKSSS
YDYEALDEAMAASIEVLPEDHQNLYKDFTVLEKDVKIPAKVLSILWDLEPEEVEDILQEF
VNRSLLFVDIHSKPHLYYLHDLQLDFLVEQNRDQIESLHAKVVHQYQNHYRDGPPTSGDE
ECHYWIRFLTYHMAKANLSLELYSLMFSLDWVSVKARIMGPALLINDYVEHGSILDKENS
EVRSQFQEFLSLSAHHLEQRPFPDVIQLALSLPHTSEVYRQARQQAQNRAKNGKLYFDLV
NKSSVENLSRLVIHPRQGSIYSACFSHDGTKVASCGASKMLKVFKSTSGERLAEILAHDE
EVLCCAFSSDDGLLATCSSDRKVKVWSAEQGKLLKAFPEEHEEQINHCEFTNTTRLLLLA
TCSNDEMNNVKLWNINKPGSQNTLFGHFKPVKHCCFSPDDSYLSTSSNDGTVKLFQVPSA
NEWKTIKVKDMISDCDNEEVFVKCSTWTSDCKRIICATIHGVLVFDVETTDLLLEIKTNR
LGTVQYCHACPTSNLLAIAFSNYTVELWDLEENKKRADCSGHLSWVQRVQFSYDGSQLLS
CSDDQTVRLWETKKVHTSSAICLKRDSDVVFNGEEVIVSAADNCNRLQVRDGRTGSVLFQ
SEETSSRIRCTCLSREPSAVGLGQENGSVRVLEVPSGKLLATLLGHTKTVLHCQFCQSGQ
TLITSSEDTTIRVWKWQSGECKVLQGHKEQVRCFSLLSDSTNDSRLLSWSFDSTVKVWDI
ESGTKLQDIEAHQGAILSCHVSPDRCLFATTSADKTAKVWRCDSWQCAYTLKGHQECVRS
CRFSWDGQRLATGDDNGEIRLWRVKDGSLLKICSQDGKDGMDSLHGGWVTDLHFSPDDSL
LVSTGGYIKWWNVVKGETLQTFYPTGSALKKVHVSADFSTFVTIDNIGILYILQRVV
NT seq 3774 nt   +upstreamnt  +downstreamnt
atggtgctggaggaacgggcgcggagctccctgctgcgccttcgaaacaaactggagcag
gacatcaagcccccctgtctcatggaccacatgatcactgatggcgctatgactggggac
gaagaggagaagatcatgactcaacccaacaggaaggatcaggctgcagccctgctcaat
ctcctgctgagaaaggacaattgttcctacatttctttctacaatgcactggttaaagag
ggatataatgatttggcctgtctgctgcgtgccgatctaccacacgtgtcatctgaggtg
cataatggctcttctggccactctacgtcttatgttcaggcgatgctaagtgaaggcggt
gtaccacaaaggcctgttgtgtttgtcagcagacaagagctgataaatcaggttcggctg
aagctttatcaactccagaacgactctggctgggttacaatctatggcatggctggttcg
ggcaagtctgtgcttgcttctgaggctgttagacacccccaactcattaaagagtgtttt
cctggagggatccattggctgtctgtcggtcagctggacaaaccagacctgctggtaaag
atccagtctctgtgttttcgtctggatcagagcctggatgaaaagtcactcccccccaac
tccctggatttagccaaggagcgcctgcgcttcctcatgttgcgcaaatatccgagatcc
ttactaattcttgacgatatctgggacagctcggtgctgaaggtgtttgatgtacaatgt
cgggttcttctgaccactagaaacagaagcatcgctgattctgtcggtggcgtcaaacac
gaggtggaagtagaaagtggtttggatgagaaaaaggccctggagatcttggctctgtac
actgaaaaaaaacctcagactctacccgaggaggctcgtgatattgttagagaatgtaaa
ggctctcctctggtggtgtctctagtcggtgccctgctgaaagagaaacccaatcgttgg
ctttattacctccgccagctgcagcagaagaagtttaagcgcatcaggaagtcgtcctct
tacgattacgaggccttggatgaggccatggctgcgagcatcgaggttctgcccgaggac
catcagaatctctacaaagactttaccgtgttggaaaaggacgtcaagatccctgctaag
gtgctgtctattttgtgggatctggagccagaggaagtggaggacattctccaggagttc
gtcaacagatctctgctttttgtcgacattcacagcaaaccgcatttgtattaccttcat
gacctccagctggactttttggtggagcagaatcgagatcagattgagagccttcacgct
aaggtggtgcatcagtaccagaatcattacagagacggtcctcccacctcaggagacgag
gaatgccactattggatccgatttttgacctaccacatggccaaagccaacctctctctg
gagctctactcgctcatgttttcactcgactgggtcagcgtcaaggcccggataatgggt
ccagcgctcctcatcaatgactacgtggagcatgggtccattcttgataaagagaacagt
gaggttcgcagtcagttccaggagtttttgtctctgagcgcccaccacctggagcagcgt
cctttccccgatgtcattcagctcgctctgtctctgccacacacctccgaggtctacaga
caggcccgacagcaggcccagaaccgggccaagaatggaaaactctactttgacttggta
aacaagagcagtgtagagaatctgtctcgtttagtgatccatccccgccagggctccatc
tactccgcctgcttctcccacgatggaaccaaagtcgcctcttgtggagctagcaagatg
ctaaaggtgtttaaaagtacctcaggtgagagacttgcagaaatcctggcccatgatgaa
gaggtgctctgctgtgccttctcctctgatgacggtctcctagcgacctgctcgagcgac
aggaaggtcaaggtgtggagcgcagaacaagggaagctgctgaaggcctttccggaggag
cacgaggagcagatcaaccactgtgagttcaccaacacaacacggctcctcctcctggcc
acctgctccaacgatgaaatgaacaatgtcaagttgtggaatatcaacaagccaggatcc
cagaacaccttgtttggccactttaagccggtgaagcactgctgtttctcccccgatgat
agttatttgtccacttcgtccaacgacggtactgttaagctgtttcaggtcccgtctgcc
aacgagtggaagacgatcaaagtgaaggacatgatctctgactgcgacaatgaagaggtc
ttcgtcaagtgcagcacctggaccagtgactgcaaacgcatcatttgtgccaccatacat
ggtgttttggtatttgatgttgagacaactgacctgctgttggagataaagaccaatcgt
cttggcacagtgcaatactgtcacgcctgtcctaccagtaacctgctggcaatagcattc
tcaaactacactgtggagctgtgggatctcgaagagaataagaaacgggccgactgtagc
ggccacctgagctgggttcagcgtgtgcagttttcttacgacggctcacagctgctctcc
tgctcagacgaccagactgtcaggttatgggaaacaaagaaggtccacacatcttcagcc
atctgcctgaagagagattcagacgttgtctttaacggcgaggaagtgatcgtgtcggct
gcagacaactgcaacagactgcaggtgcgtgacggcagaacgggatcggtgctgttccag
tcggaggagacgtcgtccaggatccgatgtacctgtctgagcagggagccgtctgctgtg
ggtctgggccaggagaacggcagtgtgcgggtcctggaggtgccctccggtaagctttta
gccacccttctggggcacactaagactgtgcttcactgccagttctgccagagtggccaa
acgctcatcacatcctctgaggacaccaccatcagggtgtggaagtggcagtcaggggag
tgtaaagtacttcagggtcacaaggagcaagtcagatgcttctctctgctctccgactca
acaaatgactcgagactactgtcctggtcctttgatagtaccgtgaaggtgtgggacatt
gagagtggaacaaaattgcaggacatcgaggctcatcagggagccattctgtcctgtcac
gtctcgccagacagatgtctctttgcgaccacctctgccgacaagaccgctaaggtgtgg
cgctgtgattcttggcagtgtgcgtacacgctgaaaggtcaccaagagtgtgtcagaagc
tgccggttttcctgggatggccagcgcctcgcaacgggggatgacaacggagagatccgg
ctctggagagtcaaagatggctctttactgaagatttgttcccaggacggtaaagacggc
atggactccctccacggaggctgggtgacagatctccacttctcaccggacgactccctt
ctcgtctcaaccggaggctacatcaagtggtggaacgtggtgaaaggcgaaacccttcag
acgttctacccgacaggaagcgctctgaagaaagtccacgtttcggccgacttctccacc
ttcgtcaccatcgacaacatcggcatcctctacatcctccagagggtggtgtga

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