Kryptolebias marmoratus (mangrove rivulus): 108236516
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Entry
108236516 CDS
T05608
Symbol
kdm2ba
Name
(RefSeq) lysine (K)-specific demethylase 2Ba isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
108236516 (kdm2ba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
kmr03000
]
108236516 (kdm2ba)
04121 Ubiquitin system [BR:
kmr04121
]
108236516 (kdm2ba)
03036 Chromosome and associated proteins [BR:
kmr03036
]
108236516 (kdm2ba)
Enzymes [BR:
kmr01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
108236516 (kdm2ba)
Transcription factors [BR:
kmr03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
108236516 (kdm2ba)
Ubiquitin system [BR:
kmr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
108236516 (kdm2ba)
Chromosome and associated proteins [BR:
kmr03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
108236516 (kdm2ba)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
108236516 (kdm2ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
C1_1
Rubredoxin
Motif
Other DBs
NCBI-GeneID:
108236516
NCBI-ProteinID:
XP_017272680
LinkDB
All DBs
Position
LG1:12894267..12904617
Genome browser
AA seq
842 aa
AA seq
DB search
MALSLSGDDEEYESESEQQRAVNRPKPKMGTSSAVKLPSNRSSSGARRRRTRCRKCEACL
RTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCKEAGKEDTLENDEDK
FNFMLMECSICNEIVHPNCLKQVSDATGVVNDELPNCWECPKCNHAGKSGKSPLVLKQKR
GPGFKYASNLPGSLLREQKPVKEEGDVSAAAKRRPDREETPRFRAEDALHRQPPLLSPSG
QPRPRPEDKLRKKRKLFDDEEEEDLSVKKKEKPDDSYFSKLASQIKTEREDEGGYGEDDE
DGRDLHFRSSVDRKGRFGDTEEDSRNDPLNPSIRTPVGDSDQSYCSSPQAGPSSEGGSET
QEKGPRPKARRKRHLPNNRELSRELSKALNQEIQKTEDSLAIENRQPLKVEPETENEEPK
RLFRNGMELGDQRPHLKAKEMNGSNWELRHFYQSPITPLGFNRSTPTTRPVPPRSPPKCV
QMERHVIRPPPISPPPDRLPLKDGKAHVLQREVWMKIFSYLSHPELCICMSVCKTWNRWC
CDKRLWTKIDLNRCTSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRVLQL
AGCSWAAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRCKLRNVE
DLRLAGLDITDTSLRLISRQMPLLSRLDLSYCNHINDQSVNLLTAKGTTTRDSLTEINLS
GEPRGPRRPTAPGVVSYSLQPSHGLLPELFQALRQHLSDRPSLLQAGDEDGLREVHRGDV
RERPVQTEGGQTAAEDELVANGTRQQTGVALKGSGPRDEPAESLVIKPEQEAEVPGGRCA
LT
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atggccttgtcactgagcggagacgatgaggaatatgagtcagagtccgaacagcagcga
gcagtcaaccgacccaagcccaagatggggacgtcctcggccgttaagctgccgtccaac
cgcagctcctccggagcccggcgcaggaggacgcgctgcaggaagtgcgaggcgtgcctc
cggaccgaatgcggcgagtgtcatttctgtaaggatatgaagaagttcggtgggccgggc
cgcatgaagcagtcctgcattatgcgacagtgcatcgcgcccgtcctgccccacaccgcc
gtgtgtgtggtgtgcaaggaggcggggaaggaggacacgctggagaacgacgaggacaag
ttcaacttcatgctcatggagtgctccatctgtaacgagatcgtccaccccaactgcctg
aagcaggtcagcgacgccacaggagtggtgaacgacgagctccccaactgctgggagtgt
cccaaatgcaaccatgctgggaaaagtgggaaatcccccttggtattgaagcaaaaaagg
ggtcccgggttcaaatacgcgtccaacctccccggctctttgctgagggaacagaagccc
gtgaaggaggagggggacgtgtccgctgcggcgaagaggagaccggacagagaggagacg
cccaggttccgagccgaggacgccctccaccgtcagccgccgctgctgtcccccagcggt
cagccgcggcccaggccagaggacaagctgaggaagaagaggaagctgtttgacgatgag
gaggaggaggatctttctgtgaagaagaaggaaaagccggatgactcctatttttccaaa
ctcgcgtctcaaattaagacagaacgggaggacgagggcgggtatggggaagacgacgaa
gatggaagggatcttcacttccggagcagtgtagacaggaaagggcgcttcggggacact
gaagaggactccaggaatgaccctttgaatccttccatcaggacaccggtcggggacagt
gaccagtcctactgcagctccccgcaggccggccccagcagcgagggggggagcgagacg
caggagaagggtccccgtcccaaagctcgccgcaagcggcacttgccgaacaacagggag
ctgagtcgagaactgagcaaagcgctgaaccaggaaatccagaagactgaggactccctg
gccatcgagaaccggcagcccctcaaggtggagccggaaacggagaacgaggagccgaag
aggctcttccgcaacggtatggaactcggcgatcagaggcctcacctgaaggccaaagag
atgaacgggagcaactgggaactgcgccacttctaccagagtccgatcactccgctgggc
ttcaaccggagcaccccgaccacgcggcctgtgcccccgcgttccccgcccaagtgtgtg
caaatggagcggcacgtcattcggccccctcccataagcccccctccggacaggctgccc
ctgaaggatggtaaagcgcacgttctccagcgagaggtctggatgaagatcttcagttat
ctgtcacacccggagctgtgcatctgcatgagcgtttgcaagacgtggaacagatggtgt
tgcgataagagactttggacgaagatcgatctgaatcgctgcacctccatcaccccgctc
atgctaagtgggatcatccgcaggcagcccgtctccttggacctcagctggaccaacatt
tccaaaaaacagctaagctggcttattaatagattaccaggtctgcgggtgttacagctg
gccggctgctcttgggctgctgtgtctgcgctctgcacctccagctgccctctgctgcgc
accctggatgtgcagtgggtggagggactgaaagatgcacagatgagggacctgctgtca
ccgcccacagacaacagaccaggtcagctcgataaccgctgtaagctgaggaacgtggag
gacctgcggctggcggggctggacatcaccgacacgtcgctgcgtctcatcagtcgacag
atgcccctgctgtcgcggctggacctgagctactgcaaccacatcaacgaccagtccgtc
aacctgctgacggcaaagggaaccaccaccagagactcgctcacagagatcaacctgtca
ggtgagccccgcgggccgaggagaccaacggcaccaggtgttgtgtcttatagtctgcaa
ccgagtcacggattactccctgaactttttcaagcgctgcggcagcatctgtcagatcga
ccttcgctactgcaagcaggtgacgaagacgggctgcgagaggttcatcgcggagatgtc
cgtgagcgtcccgttcaaactgaaggaggacaaactgctgcagaagacgagctagtggct
aacgggacccgacaacagactggcgttgcacttaaaggaagtggcccccgcgacgagccc
gccgagtcgctcgtaataaaacctgagcaagaggcagaagttcctggagggagatgtgcg
cttacatga
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