Kryptolebias marmoratus (mangrove rivulus): 108236899
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Entry
108236899 CDS
T05608
Symbol
trpc6a
Name
(RefSeq) short transient receptor potential channel 6a isoform X1
KO
K04969
transient receptor potential cation channel subfamily C member 6
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
kmr04040
]
108236899 (trpc6a)
Ion channels [BR:
kmr04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
108236899 (trpc6a)
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Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
PKD_channel
Ank_2
Ank
Ank_4
YVC1_C
Cmr1_C
Motif
Other DBs
NCBI-GeneID:
108236899
NCBI-ProteinID:
XP_017273445
UniProt:
A0A3Q3BKR0
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Position
LG13:12504469..12515799
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AA seq
936 aa
AA seq
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MQNKQRGRARRQSEGGRHSTARSHEAGADPLQSTALGMNHRPLAAGRRSRPTADASSSRA
WSRDNLLTHDDFGEEYCCAARCLGRHSSSERQHACRFSSTVKRRQALRGPAYMFSTPSVS
PSEVEQRFLEAAEYGNIPEVRRMLLQVPELNVNAVDYMGQNALQLAVGNEHLEVTELLLG
RADLSRVGDALLLAISKGYVRITEALLSHISFRDAHRLTASPGQVDMMDDFYAYDEDGTR
FSHDVTPVILAAHCQEYEIVHTLLSKGARIDPPHDYFCGCDSCNYHQQYDSFSHSRSRIN
AYRGLASPAYLSLSNEDPVLAALELSNELAVLADIEKEFKNDYSRLSNQCKDYVVGLLDL
CRSTEEVEAILNGETVCEDTYNLPGRPSLTRLKLAIKYELKKFVAHPNCQQQLLSIWYEN
LPGLRQQTTGVKLLVVLAVVLGLPGLAVAYWITPCSRVGKVLRSPFMKFVAHASSFTIFL
CLLILNAADRFAGTSILPNMTHHQDPEGPPLGSDQLLLYRKTTTPFTWMEVLIISWVVGM
IWAEVKEIWIQGPGEYLVEPWNFLDFGMLAIFLASFSCRFSAARRADLAQDYVDEHCRAL
VGPSPRADAYDHCKTLIQLPPDVDYFTKARIDWTPSDPQLVSEGLYAIAVVLSFSRIAYI
LPANESFGPLQISLGRTVKDIFKFMVIFLLVFLAFMIGMFNLYSYYLGAKQNDAFTTLEE
SFKTLFWAIFGLSEVRSVVINNGHKFIENIGYVLYGVYNVTMVIVLLNMLIAMINSSFQE
IEDDADVEWKFARAKLWFSYFEEGRTLPVPFNLVPSPKSLLGLVTAVKSQLLQLVHRNRE
KNLGTQLAQLGQNKHSGYGGSNGPTRYQKIMKRLIKRYIIKAQADRESDEITEGELKEIK
QDISSLRYELLEEKSHNMETLDGLLGRLGDVGPPSS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgcagaataaacagagagggagggcaagacgtcagagtgagggaggcaggcactcgact
gctcgctcacatgaagcgggagccgaccctctgcagtcaaccgccctcgggatgaaccac
aggccgctggcagctggtcgcaggagtcggcccactgccgacgccagcagctcccgagca
tggagccgagacaacctgctcacgcatgatgacttcggggaggaatactgctgcgctgcg
agatgcctcggcagacacagcagctctgagaggcagcacgcatgccgcttcagcagcacc
gtcaagcggcgccaggccctgcgcggtcctgcctacatgttctccactccctccgtcagc
ccctcggaggtcgagcagcgcttcctggaggcagccgagtacggcaacataccggaggtg
cgccgcatgctgctccaggtgcccgagctgaacgtcaacgcggtggactacatgggtcag
aacgccctgcagctggctgtgggcaacgaacatctggaggtgacggagctgctgctgggg
agggcagatttgtccagagtgggtgatgccctccttttagccatcagtaagggctacgtt
cggatcaccgaggccttgctcagtcacatttccttcagagacgctcatcgcctgacagcg
agccccggccaagtagacatgatggacgacttctacgcttacgatgaagatggaacgagg
ttttctcacgatgtgactccggtgatactcgcagctcactgccaggagtacgagatcgtt
cacaccctgctgagcaaaggggcccgcatcgaccccccccacgactacttctgcggctgc
gactcgtgcaactaccaccagcagtacgactcgttcagccactcgcgctcaaggatcaac
gcctacagggggctggccagccccgcgtacctgtccctgtccaacgaggatccggtcctc
gcagctctggagctcagcaacgagctggccgtgctggccgacatcgagaaagaatttaag
aacgactacagccgcctgtcgaaccagtgtaaggactacgtggtgggccttctggacctg
tgccgcagcacagaggaggtggaggccatcctgaacggagaaacggtctgtgaggacacc
tacaacctgccaggacgcccctccctcacgcgactcaaattagccatcaaatatgagctg
aaaaagtttgtggcccatcctaactgccagcagcagctgctgagcatctggtatgagaac
ctgcccggcctgagacaacaaaccacgggcgtcaagctgctggtggttctggccgtggtt
ctcggactgcctggactggccgtcgcgtactggatcaccccgtgcagcagagtgggaaaa
gttctgcgcagtcccttcatgaagtttgtggcccacgcctcgtccttcaccatcttcctg
tgcctgctgatcctgaacgccgcagaccgtttcgccggcaccagcatcttgccaaacatg
acccaccaccaggaccctgaaggtccaccgctcggatctgaccagctgctgctctaccgt
aagaccaccacgcccttcacctggatggaggtcctcatcatctcatgggtcgtcggcatg
atttgggccgaagtgaaggagatctggatccagggacctggagagtacctggtggagccg
tggaacttcctggactttgggatgctggccattttcctcgcctcgttcagctgccgcttc
tccgccgcgagacgcgccgacttggcccaggattacgttgacgagcactgcagagcgctg
gtggggccgtctccgcgggcagatgcgtacgaccactgcaaaacgctgatccagctgcct
ccagacgtggactacttcaccaaagctcgaatcgactggacgccgtcggaccctcagctc
gtctcggaggggctctacgccatcgccgtggtgctgagcttctcccggatcgcctacatc
ctccccgccaacgagagcttcggcccactccagatctctttaggaaggaccgtcaaagac
atcttcaagttcatggtcatcttcctcctggtgttcctggccttcatgattggcatgttc
aacctgtactcgtactacctgggggcgaagcagaacgacgccttcaccaccctggaggag
agcttcaagacgctgttctgggccatcttcggactctccgaggtcaggtccgtggtgatc
aacaacgggcacaagttcatcgagaacatcggctacgtgctgtacggggtgtacaacgtc
accatggtgatagtgctgctcaacatgctcatcgccatgattaacagctccttccaggag
attgaggatgacgcagacgtggagtggaagttcgctcgggccaaactttggttttcctac
ttcgaggagggccggacgctccccgtgcccttcaacctggttcccagccccaagtccctg
ctggggctggtcacggccgtgaagagccagctcctgcagctggttcaccggaaccgagag
aagaacctggggacacaacttgctcagctcgggcagaataaacactcaggatacggaggc
tcgaacggtccaacgagatatcagaagatcatgaagcgcctgatcaagcggtacatcatc
aaggcccaggcggacagggagagcgacgagatcaccgagggagagctgaaggagatcaaa
caggacatctccagcctgcgatacgagctgctggaggaaaaatcccacaacatggagacg
ctcgacggactgctgggcagactgggggacgtgggcccaccctcatcgtaa
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