Kryptolebias marmoratus (mangrove rivulus): 108243066
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Entry
108243066 CDS
T05608
Name
(RefSeq) protocadherin gamma-C5 isoform X3
KO
K16497
protocadherin gamma subfamily C
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
kmr04515
]
108243066
Cell adhesion molecules [BR:
kmr04515
]
Cadherins
Protocadherins
108243066
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_tail
Cadherin_2
Cadherin_CELSR2_9th
Cadherin_C_2
UreE_N
Motif
Other DBs
NCBI-GeneID:
108243066
NCBI-ProteinID:
XP_017283751
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Position
LG9:17281771..17515943
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AA seq
988 aa
AA seq
DB search
MDSGRRKRSGGGGRLWRVYFCLACMSSASAQLSYSVPEELSPGSVVGNIAKDLSLPAQQI
VQRRLRVVSESGVEYFEVKEATGELIIKQKVDREQLCELTSSCSLHLQLVLENPLRIYRV
VVDVQDVNDNAPRFSTSNMSLEVSEAAAPGTRFRLESAHDPDVGTNSLRTYQLAANDFFI
LKVETKSDGSKFPELVVDKPLDREKQASFRLMLTAVDGGQPEKSGSTLLLIKILDVNDNA
PVFDEPVKKVTLLETVAQGTLVTKLNATDADSGSNGEISFMFSKYTPERVLQLFSVDSKS
GEIRVKGIVDYEKGTSYHVTVQARDGGSPAMEGSCNVIVDITDENDNAPELTLTSLNSPI
REDSVTGTVIALISAKDLDSGINGQVTLTIHQGLPFKLNSAFSMHYSLITSDRMDRETVP
EYTVVITATDAGSPPISSQITFVVKISDVNDNPPIFSQPSYSVDIPENNAPSSPIAAVSA
TDPDVGDNARISYSILPSVVQGSPISSYVYINPETGHIYSMRSLDHEQIKNFRIEVQAQD
AGVPTQATNVTVHVFVVDVNDNVPMMVHPSYPKDKRLQLTVPPSAGSGHLINKLVAVDAD
SGHNAWLFYSIAPGPNVGMFRIGAHTGELHTARKLAEEEGGSAYDIIVIIQDNGDPPKSS
SVNITVTVDEKGAANEAPVVPRHNQFYHRTGMQDITLYLIISLACVSGVAFITFVVFMVR
CLRHRDPVLGGSECCFCCYGHHRSSRYHQRPSKDLHLQLNTDGPIRYMEVVGGPQEPHMR
TYRPCYSTISSRSDFVFMKTPMLSHNNTLNMTLSRKQLMNSASEQKPPNNDWRFTQGQRP
GPSGPHMPYGTQIRWTTKNGTRATGGPEVAMGTGPWPQPPTEAEQLQALMAAANEVSEAT
ATLGPGTMGLSTRYSPQFTLQHVPDYRQNVYIPGSTATLTSNPQQQQAMAQQATQQALPP
PQASAQAEPPKAAQTPASKKKSTKKEKK
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggactccgggcggaggaagcgctccggaggaggagggaggctgtggagggtttacttc
tgtctcgcctgcatgtcctctgcctccgctcagctcagctattccgtcccagaggaatta
agtccgggctcggtcgttgggaacatcgctaaggatttaagtcttcctgctcaacagatc
gttcagaggaggctgcgagtggtctccgaatcaggggtggagtattttgaggtgaaggag
gcgaccggcgaattgattattaaacaaaaagtcgacagagaacaactgtgcgaactgacg
tcatcctgctcactacaccttcaattagtcctagagaacccactgcggatctatcgggtc
gtggtggacgttcaggacgtgaatgacaacgcgccgaggttttcaaccagcaacatgtct
ctggaggtgtcagaggcggccgcgccagggacgcggtttcgtctggagagtgcgcacgat
ccagacgtgggtaccaactccttacgcacgtaccagctggcagcaaatgacttctttatt
ttaaaagtggaaactaaaagcgatggcagcaagtttccagagctggtggtggataagcct
ttggacagagagaagcaggcctcgttccgactgatgcttaccgctgtggatgggggtcag
ccggagaaatctggctccacacttctgctcattaaaatcctggacgttaacgacaacgcg
ccggtctttgacgagccggttaagaaagtcaccttattagaaactgtggcacagggcact
ttagttacgaaattaaacgcgaccgacgcagattcgggcagcaacggggaaatatcgttc
atgtttagtaaatacacgccggaacgcgttctccagctgttcagtgtggactccaaaagc
ggagagatccgggtgaagggtattgtggattatgaaaaaggcacatcttatcacgtcaca
gtgcaggccagagatgggggctcccctgccatggagggctcctgcaacgtcatagtggac
atcactgatgagaacgacaacgccccagagctgacactgacgtcactgaacagtcccatc
agagaagactcagttacagggactgtgatagccctcataagtgccaaagacctggactct
ggcatcaatgggcaggttacattaactatccaccaaggtttacctttcaaacttaactca
gcttttagtatgcattatagtctgatcacttctgacagaatggaccgtgagactgtccca
gagtacacggtggtcatcacggccactgatgctggctccccacccatttcatcccaaata
acctttgtggtgaagatctcagatgtaaatgacaaccctcccatcttctcccaaccttca
tattctgtggacatccctgagaacaatgcccccagctcccccatcgctgctgtttcagcc
acagatccagatgtgggtgataatgctcgcatctcctattccattcttcccagcgtggtc
cagggctcacccatatcatcctatgtgtacattaatccagagactggtcacatctacagc
atgcgctccctggatcacgagcagatcaaaaatttccgcattgaggtgcaggcccaagat
gccggggtgcccacacaggcaacaaatgtcactgtgcatgtgtttgtggtggatgtgaat
gacaatgtgccaatgatggttcacccctcctaccctaaagacaaaagactgcagctcact
gtgcccccatctgcaggctcgggtcacctcataaataaactggtggcagtggatgcagac
agtgggcacaatgcatggttgttttactcaattgcacctggaccaaatgttggcatgttc
cgcattggagcccacactggggagcttcacacagcccgcaagttggccgaagaggaaggg
ggttcagcttatgatataatagtcatcatccaggataacggtgatccaccaaagtccagc
tctgtgaacataacagtaacagtagatgagaagggtgctgccaatgaagctccagttgtc
ccacgccacaaccaattttaccaccgcaccgggatgcaagacatcactctgtaccttatc
atctctctcgcctgtgtgtcaggtgtggcatttattacgtttgtggtttttatggtgcgt
tgcctgaggcaccgagacccggtgctgggaggctctgagtgctgcttctgctgctacggt
caccacaggtccagccgctaccatcagaggcccagcaaagacctgcacctgcagctcaac
actgatggacccatacgatacatggaggtggtgggaggtccccaagagccacacatgcgt
acctacaggccttgctactccactatatccagccgaagtgactttgtatttatgaagaca
cccatgctgagtcacaacaacacactcaacatgacgctcagcaggaaacagcttatgaac
tcagccagtgagcaaaagccccccaacaatgactggcgattcacgcagggacagagaccc
ggaccaagcggtccccacatgccttacggtacacaaattcgatggacaacgaagaatggg
acaagggcaactggaggacctgaggttgccatgggaactggcccctggccccagccccct
actgaagctgagcagcttcaggcgttgatggctgcagctaacgaagtgagtgaggccacg
gccaccctcggacccggcacaatgggtctgagcacccgctacagcccccagttcaccctg
cagcacgtgcccgactaccgccagaacgtctacatcccagggagcacggccaccctcacc
tccaacccccagcagcagcaggccatggcccagcaggccacgcagcaggcgctgcccccg
cctcaggcctcggcccaggccgagcccccgaaggctgcccagacccccgcctccaagaag
aagtccaccaagaaggagaagaagtaa
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