KEGG   Kitasatospora hibisci: ACF9IK_12405
Entry
ACF9IK_12405      CDS       T11051                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
knb  Kitasatospora hibisci
Pathway
knb03030  DNA replication
knb03410  Base excision repair
knb03420  Nucleotide excision repair
knb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:knb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    ACF9IK_12405 (ligA)
   03410 Base excision repair
    ACF9IK_12405 (ligA)
   03420 Nucleotide excision repair
    ACF9IK_12405 (ligA)
   03430 Mismatch repair
    ACF9IK_12405 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:knb03032]
    ACF9IK_12405 (ligA)
   03400 DNA repair and recombination proteins [BR:knb03400]
    ACF9IK_12405 (ligA)
Enzymes [BR:knb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     ACF9IK_12405 (ligA)
DNA replication proteins [BR:knb03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     ACF9IK_12405 (ligA)
DNA repair and recombination proteins [BR:knb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     ACF9IK_12405 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     ACF9IK_12405 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     ACF9IK_12405 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      ACF9IK_12405 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT HHH_5 Nlig-Ia HHH
Other DBs
NCBI-ProteinID: XIJ58174
LinkDB
Position
complement(2927108..2929486)
AA seq 792 aa
MAVEGWEDVPAEVRRRHAELAAEIEDHRARYYEQDAPIVSDAEFDALMRELEGLEDEHPA
LRTPDSPSRKVGGAVVADLFAAVEHRERLLSLDNAMDDDELAAWAERVAAELAGIEYHYL
CELKVDGLAVNLTYENGTLVQAATRGDGRVGEDITANVRTIKEIPHQLKGENVPELVEIR
GEVYFPTEAFEALNASFSEENERRRQENEERAREGKRPRAMIRLFMNPRNAAAGSLRQKD
PHVTASRPLHMVVHGIGARVGLDIDNQSHAYRLLHDWGLPTARHNKVVGTLDEVRAFIRQ
FGEQRHSVEHEIDGVVVKVDEIALQGRLGSTSKSPRWAIAWKYPPEEVTGKLAAIKVGIG
RTGRATPYAVLAEPVKVAGSMVQYATLHNQQIVKAKDVLLGDTVVLRKAGDVIPEILGPV
YDLRDGTEQEFVMPSHCHECGAELRPMAEGDIDLRCPNAQFCPAQIRERIAFLGGRSALD
IEGLGYVAATALTQPLEPAEAPVKDEGDIFGLTDEQLLPIKVLVRDPKTGMPKLDDKTAE
EKKVSFFATTTGTPKKSLQTLLDNLEKARDRPLARFLNGLSIRHVGPVAAQELAREFRDL
DRIFGASEEELAAVEGVGPIIARSIKEWYEEEWHRGILEKWRAAGVRFTEEAGDEEQGER
PLEGLTVVVTGTLDGHTRDGAKEALTSRGAKVTGSVSKKTHFVVAGDNPGSKYDRAVQLG
LPILDDAGFAVLLEQGAAAARVHLGLPPEPEEAEPVKKAPAKKSPRKAPGQPVEDAVGDT
AGDTAGEAPAEG
NT seq 2379 nt   +upstreamnt  +downstreamnt
gtggctgtcgagggctgggaggacgtcccggcggaggtgcgcaggcggcacgccgagctg
gcggccgagatcgaggaccaccgcgcccgctactacgagcaggacgcgccgatcgtcagc
gacgccgagttcgacgccctgatgcgcgagctggagggactggaggacgagcacccggcg
ctgcgcacgccggactcgccgagccggaaggtcggcggcgcggtcgtcgccgacctcttc
gccgcggtcgagcaccgcgagcggctgctcagcctggacaacgcgatggacgacgacgag
ctcgccgcctgggccgagcgggtcgcggccgagctggccggcatcgagtaccactacctc
tgcgagctcaaggtggacggcctggccgtcaacctcacctacgagaacgggacgttggtg
caggccgcgacccgcggcgacggccgggtcggcgaggacatcacggccaacgtccgcacc
atcaaggagatcccgcaccagctcaagggggagaacgtccccgagctggtcgagatccgc
ggcgaggtctacttcccgaccgaggcgttcgaggcgctcaacgcctcgttctcggaggag
aacgagcgccgccggcaggagaacgaggagcgcgccagggagggcaagcgcccccgggcg
atgatccggctgttcatgaacccgcgcaacgccgccgccggctcgctgcggcagaaggac
ccgcacgtcaccgcttcccgtccgctgcacatggtggtgcacggcatcggcgcccgggtc
ggcctcgacatcgacaaccagtcgcacgcctaccggctgctccacgactgggggctgccg
accgcccggcacaacaaggtggtggggacgctcgacgaggtccgcgccttcatcaggcag
ttcggcgagcagcggcactcggtcgagcacgagatcgacggcgtcgtggtcaaggtggac
gagatcgccctccagggccggctcggctccacctccaagtccccgcgctgggcgatcgcc
tggaagtacccgccggaggaggtcaccggcaagctggccgcgatcaaggtcggcatcggc
cgcaccggccgggccaccccgtacgcggtgctggccgagccggtgaaggtggccggctcg
atggtccagtacgcgacgctgcacaaccagcagatcgtcaaggccaaggacgtgctgctc
ggcgacaccgtggtgctgcgcaaggccggcgacgtcatcccggagatcctcggcccggtc
tacgacctgcgggacggcaccgagcaggagttcgtgatgccctcgcactgccacgagtgc
ggggccgaactgcgcccgatggccgagggcgacatcgacctgcgctgcccgaacgcccag
ttctgcccggcccagatccgcgagcggatcgcctttctgggcggccgctcggcgctggac
atcgagggcctcggctacgtcgcggccaccgcgctgacccagccgctggagccggccgag
gccccggtcaaggacgagggggacatcttcggcctgaccgacgagcagctgctgccgatc
aaggtgctggttcgcgacccgaagaccggcatgcccaagctggacgacaagaccgccgag
gagaagaaggtctccttcttcgccaccaccaccggcacgccgaagaagtcgctccagacg
ctcctggacaatctggagaaggccagggaccggccgctggcgcgattcctcaacggactg
tcgatccgtcacgtcggcccggtcgccgcgcaggagctggcccgcgagttccgggacctg
gaccggatcttcggggcgagcgaggaggagctggccgcggtcgagggtgtcgggccgatc
atcgcccgctcgatcaaggagtggtacgaggaggagtggcaccgcgggatcctggagaag
tggcgcgccgccggcgtccgcttcaccgaggaggcgggcgacgaggagcagggcgagcgt
ccgctggaggggctgaccgtggtcgtcaccgggacgctcgacgggcacacccgggacggc
gccaaggaggcgctgacctcgcgcggggccaaggtcaccggctcggtgtcgaagaagacc
cacttcgtggtggccggcgacaaccccggctccaagtacgacagggccgtccagctcggg
ctgccgatcctggacgacgcgggcttcgccgtgctgctggagcagggtgcggcggcggcc
cgggtgcatctgggcctcccgccggagcccgaggaggcggagccggtgaagaaggcgccc
gcgaagaagtccccccgcaaggcccccgggcagcccgtcgaggatgcggtcggggacacc
gccggggacaccgccggggaggcccccgcggagggctga

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