Knoellia sp. S7-12: V6K52_14130
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Entry
V6K52_14130 CDS
T10549
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kno Knoellia sp. S7-12
Pathway
kno03030
DNA replication
kno03410
Base excision repair
kno03420
Nucleotide excision repair
kno03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V6K52_14130 (ligA)
03410 Base excision repair
V6K52_14130 (ligA)
03420 Nucleotide excision repair
V6K52_14130 (ligA)
03430 Mismatch repair
V6K52_14130 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kno03032
]
V6K52_14130 (ligA)
03400 DNA repair and recombination proteins [BR:
kno03400
]
V6K52_14130 (ligA)
Enzymes [BR:
kno01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
V6K52_14130 (ligA)
DNA replication proteins [BR:
kno03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
V6K52_14130 (ligA)
DNA repair and recombination proteins [BR:
kno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
V6K52_14130 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V6K52_14130 (ligA)
MMR (mismatch excision repair)
DNA ligase
V6K52_14130 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V6K52_14130 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
RNA_lig_T4_1
Topo-V_HhH_2_2nd
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
XAU38370
LinkDB
All DBs
Position
complement(2935819..2937960)
Genome browser
AA seq
713 aa
AA seq
DB search
MSETDVVAEVPDDIRHEWTDLAEQATAHQFAYHVKDSPTVSDGEYDRLMKRLNALEDEFP
SLRTPESPTQSVGGAIFSTGFQAVDHLERLLSLDNAFSPDEMLEWSARVARDAPSGFHFL
CELKIDGLAINLLYEKGRLTRALTRGDGRTGEDVTLNVRTIDGIPTELKGTKKHPVPDLV
EVRGEIFFPIEAFGDLNASLVEAGKAPFANPRNAAAGSLRMKDPRVTATRPLRMLVHGIG
KREGFALMRQSEAYAALKAWGMPVSTHFRVVDTIEAVNEFIVSTGEHRHDVEHEIDGVVV
KVDEISVQRQLGATSRAPRWAIAYKYPPEEVNTVLLDIQVNVGRTGRVTPFGVMKPVVVA
GSTVERATLHNATEVTRKGVLIGDTIVLRKAGDVIPEILGPVVDLRDGSEREFVMPTECP
ACGTTLAPAKEGDKDIRCPNSRSCPSQLRERLSGLAGRGAFDIEALGWEGSVALLESGVL
QDESTLFGLTEADIARVPLYTRAAKKSDPAESVIEGRVLSANGAKLVANLESARAQPLWR
VLVGLSIRHVGPTAARALAQHFGSMDGIRAASVEELSGVEGVGGIIAESVRDWFDREGNE
WHVAIVDQWAADGVRMEDERDASIEQTLQGLTVVVTGSMEGFSRDEAKEAILARGGKASG
SVSKKTDYVVVGPGAGSKEGKARELELTILDEAGFVTLLESGSAEAVSEPAAE
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgagaccgacgtggtggcagaggttcccgacgacatcaggcacgagtggaccgac
ctcgccgagcaggcgacggcccaccaattcgcctaccatgtcaaggactcgccgaccgtg
agcgacggtgagtacgaccggttgatgaagcggctcaacgccctcgaggacgagtttccc
tcgctgcgcacgcccgagagccccacccagtccgtgggtggcgcgatcttctcgactggc
ttccaggccgtcgaccacctcgagcggttgctcagcctcgacaacgcgttctcgccggac
gagatgctcgagtggtcggcccgcgtggcacgtgacgcgccgtctggctttcacttcctc
tgcgagctcaagatcgacggtctcgccatcaacctcctctacgagaaggggcgtctcacg
cgcgccctgacccgcggcgacggtcgcacgggcgaggacgtgacgctcaacgtccgcacg
atcgacggcatacccaccgagctcaaggggaccaagaagcatccggtgcccgatctcgtg
gaggtgcgtggggagatcttcttcccgatcgaggcgttcggtgacctcaacgcctcgctc
gtcgaggcgggcaaggcgccgtttgccaacccgcgcaacgccgctgccgggtcgctgcgg
atgaaggaccctcgcgtcactgcgacccggccgctgcggatgctcgtccatggcatcggc
aagcgcgagggcttcgccctcatgcgacagagcgaggcgtatgccgcgttgaaggcgtgg
ggtatgccggtctcgacccatttccgcgtcgtcgacaccatcgaggcggtcaacgagttc
atcgtgtcgacgggggagcaccgccacgacgtcgagcacgagatcgatggcgtcgtcgtc
aaggtcgatgagatctcggtgcagcgccaactcggggccacgtcgcgcgcgccgcgctgg
gccatcgcctacaagtacccgccggaggaggtcaacaccgtcctcctcgacatccaggtc
aacgtcggtcgcaccggtcgcgtcacgcccttcggcgtgatgaagcccgtggtcgtcgcg
gggtcgaccgtggagcgggccaccctgcacaacgccaccgaggtcacccgcaagggcgtg
ctcatcggcgacacgatcgtcctgcgcaaggccggtgatgtcatcccggagatcctcggc
cccgtcgtcgacctgcgtgatggcagcgagcgtgagttcgtcatgccgaccgagtgcccg
gcctgtggcacgaccctggctccggccaaggagggcgacaaggacatccgctgtccgaac
tcgcgctcctgcccctctcagctgcgcgagcggttgtccgggctcgccggtcgtggcgcc
ttcgacatcgaggcactcggttgggagggctccgtcgccctcctcgagtcaggggtgctg
caggacgagtccacgctgttcgggctgaccgaggccgacatcgcccgggtgccgctctac
acacgcgcagccaagaagtccgatccggccgagtctgtcatcgagggacgcgtgctctcg
gccaacggtgccaagctcgtcgccaacctcgagtcagccagggcacagccgttgtggcgc
gttctcgtcggactctcgatccgccacgtggggccgacggcggcacgggccctggcccag
cacttcgggtccatggacgggattcgcgcggcgagtgtcgaggagttgtcgggcgtcgag
ggcgtcggcggcatcatcgccgagtcggtgcgcgactggttcgaccgcgagggcaacgag
tggcacgtcgcgatcgtcgaccagtgggccgccgatggggtgcgcatggaggacgagcgc
gacgcctcgatcgagcagaccctccaaggcctcaccgtcgtcgtcaccgggtcgatggag
ggcttcagtcgcgacgaggccaaggaggcgatcctcgcccgaggtggcaaggcatcgggc
tcggtctccaagaagaccgactatgtcgtcgtcggtcccggagccggatccaaggagggc
aaggcgcgcgagctcgagctgaccatcctcgacgaggcaggcttcgtcacgctgctcgaa
tccggttctgctgaagccgtttcggagccggccgccgaatga
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