Kolteria novifilia: Pan216_27310
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Entry
Pan216_27310 CDS
T11180
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
knv Kolteria novifilia
Pathway
knv03030
DNA replication
knv03410
Base excision repair
knv03420
Nucleotide excision repair
knv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
knv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pan216_27310 (ligA)
03410 Base excision repair
Pan216_27310 (ligA)
03420 Nucleotide excision repair
Pan216_27310 (ligA)
03430 Mismatch repair
Pan216_27310 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
knv03032
]
Pan216_27310 (ligA)
03400 DNA repair and recombination proteins [BR:
knv03400
]
Pan216_27310 (ligA)
Enzymes [BR:
knv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Pan216_27310 (ligA)
DNA replication proteins [BR:
knv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Pan216_27310 (ligA)
DNA repair and recombination proteins [BR:
knv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Pan216_27310 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pan216_27310 (ligA)
MMR (mismatch excision repair)
DNA ligase
Pan216_27310 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Pan216_27310 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
RNA_pol_A_CTD
BRCT_2
Zn_ribbon_NUD
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QDU61866
UniProt:
A0A518B4K5
LinkDB
All DBs
Position
3564947..3566962
Genome browser
AA seq
671 aa
AA seq
DB search
MSVAEEIARLRADIERHNRLYYDQASPEISDKEFDALLRRLSQLEQEHPELATPDSPTQR
VGGGLLEGFETVEHRVPMLSMENTYNADELRSFHERIVRRLEGESPAYVAEPKIDGVSIS
LHYEKARFTLGVTRGDGRRGDDVTANLRTLKNLPPRLKGNVPPVLEVRGEIFFAKKDFEE
LNRLRERAGEQLFANPRNTAAGTLKMLDSRIVAQRPLQVLVYDVGYTEGFEETTHWGSLK
RLASYGLPTNDEAKRFEDFDALLEHCLAWAERRREMPFEVDGMVIKVDDYEQRRRLGARS
KAPRWQVAYKYAAEQAVTKLHEIKVFVGKTGKLTPVAYLEPVLLAGTTVSRASLHNDEEI
KRKDVRIGDQVVVEKAGEIIPQVVAVKTERRDGSEQTFTFPTICPACGTEVKRDEGGVYI
RCPNPRCPAQFKNVLEFFAHRNAMDIDGLGPAIVEQLVETEKVKSLPDLYRLTEEDLLEL
ERMGKKSAANLIKAIAGSKERGLRRVLIGLGIHHVGQNASGLLAEEYGSIDALLEADEES
LAAIDEIGPVIAKSVHQYFHEELGQKIVAELREVGLKLTEDRQTPASDGSEAILDGKSIV
VTGKLEQFTRSEIEERIKSLGGKPSSSVSKKTEFVVAGEDAGSKLKKAQSLGIKILSEAE
FLEFVEQARSV
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgcggaagagattgcacggcttcgcgccgacatcgaacgccacaaccggctc
tattacgatcaagcctcccccgagatttccgacaaggagttcgacgctctgttgcgacgt
ctgtcgcaattggagcaggaacaccccgaattggcgacccccgatagccccacgcaacgc
gttggcggcgggttgctcgagggattcgaaaccgtcgagcatcgcgtcccgatgctatcg
atggagaacacctacaacgccgacgaactgcgttcgtttcacgagcgcatcgtccggcga
ctggagggggaatcgcccgcctacgtcgccgaaccgaagatcgatggcgtgtcgatttcc
ctgcactacgagaaggctcgcttcacgctgggggtgactcgcggcgatgggcgtcgaggc
gacgatgtcaccgcgaacctccgcacgctcaagaaccttccgccgcggctgaaggggaac
gttccgccggtactcgaggttcgtggggagatcttcttcgcgaagaaggacttcgaggaa
ctcaatcggctgcgtgaaagagcgggggagcagctcttcgccaatccgcgcaacaccgcc
gccgggacgctcaagatgctcgactcccggatcgtcgcccagcggccccttcaagtgctg
gtctacgatgtcggctataccgagggcttcgaagagaccacccattggggctcgctcaag
cgattggcgtcgtacggccttccaaccaacgacgaggcgaagcgtttcgaggacttcgac
gccttgttggaacattgtctcgcgtgggcggaacgtcgccgggagatgccgttcgaagtc
gacgggatggtgatcaaggtcgatgactacgagcaacgtcgtcggctcggggcgcgcagc
aaggcgccccgctggcaagtcgcttacaagtacgccgccgaacaagccgtcaccaaactc
cacgagattaaggtcttcgtcgggaagacgggcaagctgacaccggtggcctatctcgaa
ccggtcttgctcgcgggaacgacggtctcccgcgccagtctccacaacgacgaggagatc
aagcggaaggatgtccggatcggcgatcaagtcgtcgtcgagaaagccggcgagatcatt
ccccaggttgtcgcggtgaagacggaacggcgcgacggttccgaacagaccttcactttt
cccaccatctgtccggcttgtggtaccgaggtcaagcgggacgaagggggcgtctacatt
cgctgcccaaacccgcgctgcccggcgcagttcaagaatgtgctcgagttcttcgctcac
cgcaacgcgatggacatcgacgggctcggtccggcgatcgtggaacaactcgtcgaaacc
gagaaggtgaaatcgctccccgatctctaccggctcaccgaggaggatctgctcgaactg
gaacggatgggtaagaagtccgcggcaaacctgatcaaggcgatcgcgggaagcaaggag
cgtggactgcgccgggtgctgatcgggttggggattcaccacgtgggccagaatgcctcg
gggctgctcgccgaggaatacggttcgatcgacgcccttctcgaagccgacgaggagagc
ctcgcggcgatcgacgagatcgggcccgtcatcgccaagagcgttcatcaatactttcac
gaggaactcggtcagaagatcgtggccgaattgcgcgaggtcgggttgaagctcaccgag
gatcgccaaacgccggccagcgacggctccgaggcgatcctggacggtaagtcgatcgtg
gtgaccggcaagctcgagcagttcacccgctcggagatcgaggagcgaatcaagtcgctc
ggcggcaagccctcctcgagcgtctcgaagaagaccgagttcgtcgtcgccggcgaggat
gcgggcagcaaactcaagaaagcacagtcgctgggaatcaagatcctatccgaagccgag
ttcctcgagttcgtcgagcaagcgcggtcagtgtag
DBGET
integrated database retrieval system
