KEGG   PATHWAY: ko03259
Entry
ko03259                     Pathway                                
Name
Virion - Bacteriophages T4 and T7
Class
Genetic Information Processing; Information processing in viruses
Pathway map
ko03259  Virion - Bacteriophages T4 and T7
ko03259

Other DBs
PDB: 5VF3 3JA7 6UZC 3J2M 1AA0 5W5F 4UXG 2XGF 1PDP 2FL8 5HX2 1PDJ 1K28 5IV5 3J7X 2XVR 6YT5 7K5C 7EY6 7EY9 7BOY 4A0T 4BIL
Orthology
K18951  gp30; Straboviridae DNA ligase [EC:6.5.1.1]
K18960  gp49; Straboviridae recombination endonuclease VII
K18961  rnlA; Straboviridae RNA ligase 1 [EC:6.5.1.3]
K21079  gp23; Straboviridae major head protein
K21508  gp16; Autographiviridae peptidoglycan hydrolase [EC:4.2.2.-]
K21523  gp17; Straboviridae terminase, large subunit [EC:3.1.-.-]
K21524  gp16; Straboviridae terminase, small subunit
K21530  gp25; Straboviridae baseplate wedge protein
K21531  gp18; Straboviridae tail sheath protein
K26029  gp5; Straboviridae pre-baseplate central spike protein Gp5
K26033  alt; Straboviridae NAD(+)--arginine ADP-ribosyltransferase
K26046  gp4; Straboviridae/Kyanoviridae head completion nuclease
K26754  gp24; Straboviridae capsid vertex protein
K26755  soc; Straboviridae small outer capsid protein
K26756  hoc; Straboviridae highly immunogenic outer capsid protein
K26757  ipi1; Straboviridae internal protein I
K26758  ipi2; Straboviridae internal protein II
K26759  ipi3; Straboviridae internal protein III
K26760  inh; Straboviridae inhibitor of prohead protease Gp21, minor capsid protein
K26761  gp21; Straboviridae prohead core protein protease
K26762  gp22; Straboviridae capsid assembly scaffolding protein
K26763  gp67; Straboviridae prehead core component PIP
K26764  gp68; Straboviridae prohead assembly protein Gp68
K26765  gp20; Straboviridae portal protein
K26766  gp13; Straboviridae neck protein Gp13
K26767  gp14; Straboviridae neck protein Gp14
K26768  gp2; Straboviridae terminal DNA protecting protein
K26771  gp15; Straboviridae tail completion protein Gp15
K26772  gp3; Tequatrovirus tail tube terminator protein
K26773  wac; Straboviridae fibritin
K26774  gp19; Straboviridae tail tube protein Gp19
K26775  gp34; Straboviridae long-tail fiber proximal subunit
K26776  gp35; Straboviridae long-tail fiber protein Gp35
K26777  gp36; Straboviridae long-tail fiber protein Gp36
K26778  gp37; Straboviridae long-tail fiber protein Gp37
K26779  gp9; Straboviridae baseplate protein Gp9
K26780  gp10; Straboviridae baseplate wedge protein Gp10
K26781  gp11; Straboviridae baseplate wedge protein Gp11
K26782  gp12; Straboviridae short tail fiber protein Gp12
K26783  gp6; Straboviridae baseplate wedge protein Gp6
K26784  gp7; Straboviridae baseplate wedge protein Gp7
K26785  gp8; Straboviridae baseplate wedge protein Gp8
K26786  gp53; Straboviridae baseplate wedge protein Gp53
K26788  gp27; Straboviridae baseplate hub protein Gp27
K26789  gp5.4; Straboviridae baseplate puncturing device Gp5.4
K26790  gp26; Straboviridae baseplate hub assembly protein Gp26
K26791  gp28; Straboviridae baseplate hub assembly protein Gp28
K26792  gp29; Straboviridae tape measure protein
K26793  gp51; Straboviridae baseplate hub assembly protein Gp51
K26794  gp48; Straboviridae baseplate tail-tube junction protein Gp48
K26795  gp54; Straboviridae baseplate tail-tube junction protein Gp54
K26803  gp31; Straboviridae capsid assembly protein Gp31
K26804  gp40; Straboviridae head formation protein
K26805  gp38; Straboviridae tail fiber assembly protein
K26806  gp57; Straboviridae tail fiber assembly helper protein
K26940  gp10; Autographiviridae major head protein
K26941  gp15; Autographiviridae internal virion protein Gp15
K26942  gp14; Autographiviridae internal virion protein Gp14
K26943  gp8; Autographiviridae portal protein
K26944  gp11; Autographiviridae tail tubular protein Gp11
K26945  gp12; Autographiviridae tail tubular protein Gp12
K26946  gp17; Autographiviridae tail fiber protein
K26947  gp9; Autographiviridae capsid assembly scaffolding protein
K26948  gp13; Autographiviridae probable scaffold protein Gp13
K26949  gp6.7; Autographiviridae protein 6.7
K26950  gp7.3; Autographiviridae protein 7.3
K26951  gp19; Autographiviridae terminase large subunit
K26952  gp18; Autographiviridae terminase small subunit
Reference
  Authors
Miller ES, Kutter E, Mosig G, Arisaka F, Kunisawa T, Ruger W.
  Title
Bacteriophage T4 genome.
  Journal
Microbiol Mol Biol Rev 67:86-156, table of contents (2003)
DOI:10.1128/mmbr.67.1.86-156.2003
Reference
  Authors
Yap ML, Rossmann MG
  Title
Structure and function of bacteriophage T4.
  Journal
Future Microbiol 9:1319-27 (2014)
DOI:10.2217/fmb.14.91
Reference
  Authors
Leiman PG, Arisaka F, van Raaij MJ, Kostyuchenko VA, Aksyuk AA, Kanamaru S, Rossmann MG
  Title
Morphogenesis of the T4 tail and tail fibers.
  Journal
Virol J 7:355 (2010)
DOI:10.1186/1743-422X-7-355
Reference
  Authors
Yap ML, Klose T, Arisaka F, Speir JA, Veesler D, Fokine A, Rossmann MG
  Title
Role of bacteriophage T4 baseplate in regulating assembly and infection.
  Journal
Proc Natl Acad Sci U S A 113:2654-9 (2016)
DOI:10.1073/pnas.1601654113
Reference
  Authors
Chen Z, Sun L, Zhang Z, Fokine A, Padilla-Sanchez V, Hanein D, Jiang W, Rossmann MG, Rao VB
  Title
Cryo-EM structure of the bacteriophage T4 isometric head at 3.3-A resolution and its relevance to the assembly of icosahedral viruses.
  Journal
Proc Natl Acad Sci U S A 114:E8184-E8193 (2017)
DOI:10.1073/pnas.1708483114
Reference
  Authors
Sun L, Zhang X, Gao S, Rao PA, Padilla-Sanchez V, Chen Z, Sun S, Xiang Y, Subramaniam S, Rao VB, Rossmann MG
  Title
Cryo-EM structure of the bacteriophage T4 portal protein assembly at near-atomic resolution.
  Journal
Nat Commun 6:7548 (2015)
DOI:10.1038/ncomms8548
Reference
  Authors
Rao VB, Fokine A, Fang Q, Shao Q
  Title
Bacteriophage T4 Head: Structure, Assembly, and Genome Packaging.
  Journal
Viruses 15:527 (2023)
DOI:10.3390/v15020527
Reference
  Authors
Fang Q, Tang WC, Tao P, Mahalingam M, Fokine A, Rossmann MG, Rao VB
  Title
Structural morphing in a symmetry-mismatched viral vertex.
  Journal
Nat Commun 11:1713 (2020)
DOI:10.1038/s41467-020-15575-4
Reference
  Authors
Sun S, Gao S, Kondabagil K, Xiang Y, Rossmann MG, Rao VB
  Title
Structure and function of the small terminase component of the DNA packaging machine in T4-like bacteriophages.
  Journal
Proc Natl Acad Sci U S A 109:817-22 (2012)
DOI:10.1073/pnas.1110224109
Reference
  Authors
Fokine A, Zhang Z, Kanamaru S, Bowman VD, Aksyuk AA, Arisaka F, Rao VB, Rossmann MG
  Title
The molecular architecture of the bacteriophage T4 neck.
  Journal
J Mol Biol 425:1731-44 (2013)
DOI:10.1016/j.jmb.2013.02.012
Reference
  Authors
Taylor NM, Prokhorov NS, Guerrero-Ferreira RC, Shneider MM, Browning C, Goldie KN, Stahlberg H, Leiman PG
  Title
Structure of the T4 baseplate and its function in triggering sheath contraction.
  Journal
Nature 533:346-52 (2016)
DOI:10.1038/nature17971
Reference
  Authors
Guo F, Liu Z, Fang PA, Zhang Q, Wright ET, Wu W, Zhang C, Vago F, Ren Y, Jakana J, Chiu W, Serwer P, Jiang W
  Title
Capsid expansion mechanism of bacteriophage T7 revealed by multistate atomic models derived from cryo-EM reconstructions.
  Journal
Proc Natl Acad Sci U S A 111:E4606-14 (2014)
DOI:10.1073/pnas.1407020111
Reference
  Authors
Ionel A, Velazquez-Muriel JA, Luque D, Cuervo A, Caston JR, Valpuesta JM, Martin-Benito J, Carrascosa JL
  Title
Molecular rearrangements involved in the capsid shell maturation of bacteriophage T7.
  Journal
J Biol Chem 286:234-42 (2011)
DOI:10.1074/jbc.M110.187211
Reference
  Authors
Perez-Ruiz M, Pulido-Cid M, Luque-Ortega JR, Valpuesta JM, Cuervo A, Carrascosa JL
  Title
Assisted assembly of bacteriophage T7 core components for genome translocation across the bacterial envelope.
  Journal
Proc Natl Acad Sci U S A 118:2026719118 (2021)
DOI:10.1073/pnas.2026719118
Reference
  Authors
Chen W, Xiao H, Wang L, Wang X, Tan Z, Han Z, Li X, Yang F, Liu Z, Song J, Liu H, Cheng L
  Title
Structural changes in bacteriophage T7 upon receptor-induced genome ejection.
  Journal
Proc Natl Acad Sci U S A 118:2102003118 (2021)
DOI:10.1073/pnas.2102003118
Reference
  Authors
Cuervo A, Fabrega-Ferrer M, Machon C, Conesa JJ, Fernandez FJ, Perez-Luque R, Perez-Ruiz M, Pous J, Vega MC, Carrascosa JL, Coll M
  Title
Structures of T7 bacteriophage portal and tail suggest a viral DNA retention and ejection mechanism.
  Journal
Nat Commun 10:3746 (2019)
DOI:10.1038/s41467-019-11705-9
Reference
  Authors
Chen W, Xiao H, Wang X, Song S, Han Z, Li X, Yang F, Wang L, Song J, Liu H, Cheng L
  Title
Structural changes of a bacteriophage upon DNA packaging and maturation.
  Journal
Protein Cell 11:374-379 (2020)
DOI:10.1007/s13238-020-00715-9
Reference
  Authors
Garcia-Doval C, van Raaij MJ
  Title
Structure of the receptor-binding carboxy-terminal domain of bacteriophage T7 tail fibers.
  Journal
Proc Natl Acad Sci U S A 109:9390-5 (2012)
DOI:10.1073/pnas.1119719109
Reference
  Authors
Kemp P, Garcia LR, Molineux IJ
  Title
Changes in bacteriophage T7 virion structure at the initiation of infection.
  Journal
Virology 340:307-17 (2005)
DOI:10.1016/j.virol.2005.06.039
Reference
  Authors
Dauden MI, Martin-Benito J, Sanchez-Ferrero JC, Pulido-Cid M, Valpuesta JM, Carrascosa JL
  Title
Large terminase conformational change induced by connector binding in bacteriophage T7.
  Journal
J Biol Chem 288:16998-17007 (2013)
DOI:10.1074/jbc.M112.448951

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