KEGG   PATHWAY: ko03430
Entry
ko03430                     Pathway                                
Name
Mismatch repair
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
ko03430  Mismatch repair
ko03430

Other DBs
GO: 0006298
Orthology
K01141  sbcB, exoI; exodeoxyribonuclease I [EC:3.1.11.1]
K01972  E6.5.1.2, ligA, ligB; DNA ligase (NAD+) [EC:6.5.1.2]
K02327  POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
K02328  POLD2; DNA polymerase delta subunit 2
K02337  dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338  dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339  holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340  holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341  holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342  dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343  dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02344  holD; DNA polymerase III subunit psi [EC:2.7.7.7]
K02345  holE; DNA polymerase III subunit theta [EC:2.7.7.7]
K03111  ssb; single-strand DNA-binding protein
K03504  POLD3; DNA polymerase delta subunit 3
K03505  POLD4; DNA polymerase delta subunit 4
K03555  mutS; DNA mismatch repair protein MutS
K03572  mutL; DNA mismatch repair protein MutL
K03573  mutH; DNA mismatch repair protein MutH
K03601  xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602  xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K03657  uvrD, pcrA; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03763  polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K04802  PCNA; proliferating cell nuclear antigen
K06223  dam; DNA adenine methylase [EC:2.1.1.72]
K07456  mutS2; DNA mismatch repair protein MutS2
K07462  recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K07466  RFA1, RPA1, rpa; replication factor A1
K08734  MLH1; DNA mismatch repair protein MLH1
K08735  MSH2; DNA mismatch repair protein MSH2
K08736  MSH3; DNA mismatch repair protein MSH3
K08737  MSH6; DNA mismatch repair protein MSH6
K08739  MLH3; DNA mismatch repair protein MLH3
K10739  RFA2, RPA2; replication factor A2
K10740  RPA3; replication factor A3
K10741  RPA4; replication factor A4
K10746  EXO1; exonuclease 1 [EC:3.1.-.-]
K10747  LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
K10754  RFC1; replication factor C subunit 1
K10755  RFC2_4; replication factor C subunit 2/4
K10756  RFC3_5; replication factor C subunit 3/5
K10857  exoX; exodeoxyribonuclease X [EC:3.1.11.-]
K10858  PMS2; DNA mismatch repair protein PMS2
K14159  rnhA-dnaQ; ribonuclease HI / DNA polymerase III subunit epsilon [EC:3.1.26.4 2.7.7.7]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
Related
pathway
ko05210  Colorectal cancer

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