KEGG   PATHWAY: ko04711
Entry
ko04711                     Pathway                                
Name
Circadian rhythm - fly
Description
Circadian rhythm is an internal biological clock, which enables to sustain an approximately 24-hour rhythm in the absence of environmental cues. In the fruit fly Drosophila melanogaster, seven genes that contribute to the central clock function are known: period (per), timeless (tim), Clock (Clk), cycle (cyc), vrille (vri), double-time (dbt), and shaggy (sgg). The core of the circadian clock consists of molecular feedback loops where per and tim gene products (PER and TIM proteins) eventually turn off their own transcription. The CLK/CYC heterodimer activates transcription of per and tim genes, while the PER and TIM repressor proteins accumulate in the cytoplasm. After nuclear entry of PER and TIM, transcription is inhibited by direct binding of the PER/TIM heterodimer to the CLK/CYC heterodimer. This shutoff lasts until the PER and TIM proteins are degraded allowing a new round of transcription to occur.
Class
Organismal Systems; Environmental adaptation
Pathway map
ko04711  Circadian rhythm - fly
ko04711

Other DBs
GO: 0007623
Orthology
K08960  casein kinase 1, epsilon [EC:2.7.11.1]
K27238  bride of doubletime
K02633  period circadian protein 2
K23643  protein LSM12
K23625  ataxin 2/2L
K23644  twenty-four
K12074  timeless
K02223  circadian locomoter output cycles kaput protein [EC:2.3.1.48]
K02296  aryl hydrocarbon receptor nuclear translocator-like protein 1
K27237  transcription factor CWO
K12114  vrille
K09057  hepatic leukemia factor
K03083  glycogen synthase kinase 3 beta [EC:2.7.11.26]
Reference
  Authors
Panda S, Hogenesch JB, Kay SA.
  Title
Circadian rhythms from flies to human.
  Journal
Nature 417:329-35 (2002)
DOI:10.1038/417329a
Reference
  Authors
Harmer SL, Panda S, Kay SA.
  Title
Molecular bases of circadian rhythms.
  Journal
Annu Rev Cell Dev Biol 17:215-53 (2001)
DOI:10.1146/annurev.cellbio.17.1.215
Reference
  Authors
Young MW, Kay SA.
  Title
Time zones: a comparative genetics of circadian clocks.
  Journal
Nat Rev Genet 2:702-15 (2001)
DOI:10.1038/35088576
Reference
  Authors
Cyran SA, Buchsbaum AM, Reddy KL, Lin MC, Glossop NR, Hardin PE, Young MW, Storti RV, Blau J.
  Title
vrille, Pdp1, and dClock form a second feedback loop in the Drosophila circadian clock.
  Journal
Cell 112:329-41 (2003)
DOI:10.1016/S0092-8674(03)00074-6
Reference
  Authors
Helfrich-Forster C
  Title
The circadian system of Drosophila melanogaster and its light input pathways.
  Journal
Zoology (Jena) 105:297-312 (2002)
DOI:10.1078/0944-2006-00074
Reference
  Authors
Stanewsky R
  Title
Genetic analysis of the circadian system in Drosophila melanogaster and mammals.
  Journal
J Neurobiol 54:111-47 (2003)
DOI:10.1002/neu.10164
Reference
  Authors
Lee J, Yoo E, Lee H, Park K, Hur JH, Lim C
  Title
LSM12 and ME31B/DDX6 Define Distinct Modes of Posttranscriptional Regulation by ATAXIN-2 Protein Complex in Drosophila Circadian Pacemaker Neurons.
  Journal
Mol Cell 66:129-140.e7 (2017)
DOI:10.1016/j.molcel.2017.03.004
Related
pathway
ko04710  Circadian rhythm
LinkDB

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