Kosakonia sp. SMBL-WEM22: HF650_17100
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Entry
HF650_17100 CDS
T08549
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kob
Kosakonia sp. SMBL-WEM22
Pathway
kob03030
DNA replication
kob03410
Base excision repair
kob03420
Nucleotide excision repair
kob03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HF650_17100 (ligA)
03410 Base excision repair
HF650_17100 (ligA)
03420 Nucleotide excision repair
HF650_17100 (ligA)
03430 Mismatch repair
HF650_17100 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kob03032
]
HF650_17100 (ligA)
03400 DNA repair and recombination proteins [BR:
kob03400
]
HF650_17100 (ligA)
Enzymes [BR:
kob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HF650_17100 (ligA)
DNA replication proteins [BR:
kob03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HF650_17100 (ligA)
DNA repair and recombination proteins [BR:
kob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HF650_17100 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HF650_17100 (ligA)
MMR (mismatch excision repair)
DNA ligase
HF650_17100 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HF650_17100 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
5_3_exonuc
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
QNQ21322
UniProt:
A0A7H0MGB1
LinkDB
All DBs
Position
complement(3555456..3557474)
Genome browser
AA seq
672 aa
AA seq
DB search
MESIEQQLTELRTTLRHHEHLYHVMDAPEIPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAAPLTAFTQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDALIYCCELKLDGLA
VSLLYENGVLMRAATRGDGTTGEDITSNVRTIRAIPLKLRGENIPARLEVRGEVFLPQSG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGILEGGELPNSHL
ARLQQFKAWGLPVSDRIRLCGTPEEVLAFYHKVEEDRPTLGFDIDGVVIKVDSLDLQAQL
GFVARAPRWAVAFKFPAQEQLTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIDRLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETREVTFPAHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEKAKETTFARFLYALGVREVGEATAAGLAAYFGTLEALIA
ASVDELQKVPDVGVVVAKHVHNFFSEESNRDVIRQLTEEVGIHWPAPLVVNAEEIDSPFA
GKTVVLTGSLSQLSRDEAKERLTALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAV
IDEDEMIRLLGA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaattgaacaacaactgacagaactgcgaactacccttcgccatcatgaacat
ctctatcacgttatggacgcgccggagatcccggatgccgagtacgatcgcctgatgcgc
gagctgcgcgagctggaagcgcaacaccctgagctgattacgccagattcaccgacccag
cgcgtcggtgccgcgccgctgactgcctttacgcaggtgcgccatgaagtgccgatgctg
tcactcgataacgtcttcgatgaagagagttttctggcatttaacaaacgcgtacaggat
cgcttaaagagcagcgatgcactgatctactgctgtgagctgaagctcgacggcctggcg
gtcagcctgctgtatgaaaatggggtgctgatgcgcgccgccacacgcggcgatggcact
accggcgaagatatcacctctaacgtgcgcaccatccgcgccattccgctgaaactgcgc
ggggagaacattccggcgcgcctggaagtgcgcggtgaagttttcctcccgcaatccggc
tttgaaaagattaatgaagaggcgcgtcgcaccggcgggaaagtgtttgcgaacccgcgt
aatgccgccgccggttcgctgcgccaactcgaccctcgcatcaccgcgaagcgtccgctc
accttcttctgctacgggattggcatcctcgaaggcggcgagctgcccaacagccacctg
gcgcgtttgcagcagtttaaagcgtgggggctgccggtcagcgatcgtattcgcctctgc
ggcacgccggaagaggtgctggccttctaccataaagtggaagaggaccgcccgacgctc
ggctttgatatcgacggcgtggtaatcaaggtcgactcgctcgatctgcaggcgcagctc
ggctttgtggcacgtgcgccgcgctgggcggtggcatttaaattcccggcccaggagcag
ctgacgtttgtgcgcgatgtcgagttccaggtagggcgcaccggggcgattacccccgtc
gcgcgccttgagcctgtacacgttgccggtgtgctggtcagcaacgccaccctgcataat
gccgatgagattgatcgacttgggctacggatcggtgacaaagtggtgattcgccgcgcc
ggggatgtgatcccgcaggtggtgaatgtggtgctttctgagcgaccagaagagacacgt
gaagtgaccttcccggcacactgcccggtgtgcggctccgacgttgagcgtgtcgaaggc
gaagcggttgcccgctgcaccggtggcttaatctgcggcgcgcagcgcaaagagtcactc
aagcacttcgtctcgcgccgcgcgatggatgtggatggtatgggcgataagattatcgac
cagctggttgagaaggagtatgtccatacccctgcggatctcttccgcctgaccgccggg
aaactgacgggtctcgaccggatggggccaaagtcggcacaaaacgtggtcaatgcactg
gagaaagcgaaagagacaacttttgctcgtttcctttatgcacttggcgttcgcgaagta
ggcgaagcgacggctgccgggctggcggcctacttcggcacgctggaggcattgattgcg
gcttcggttgatgagctgcaaaaagtgccggacgttggcgtggtggtggcaaaacacgtg
cataacttcttcagtgaagagagcaaccgcgacgtgattcgtcagctgacggaagaggtg
ggtattcactggcccgcgccgctggtggtcaatgccgaggagatcgacagcccgttcgcc
ggtaaaaccgtggtgctcaccggcagcctgagccagctgtcgcgtgacgaagccaaagag
cgcttaacggcgttgggggcgaaagtagctggcagcgtatcgaagaagaccgatctggtg
attgccggagaagccgcaggctcgaagctggcgaaagcacaagagttgggcattgcggtt
atcgacgaagatgaaatgattcgtctgctgggagcgtaa
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integrated database retrieval system
