Klebsiella oxytoca CAV1374: AB185_15270
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Entry
AB185_15270 CDS
T04534
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
koc
Klebsiella oxytoca CAV1374
Pathway
koc03030
DNA replication
koc03410
Base excision repair
koc03420
Nucleotide excision repair
koc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
koc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB185_15270 (ligA)
03410 Base excision repair
AB185_15270 (ligA)
03420 Nucleotide excision repair
AB185_15270 (ligA)
03430 Mismatch repair
AB185_15270 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
koc03032
]
AB185_15270 (ligA)
03400 DNA repair and recombination proteins [BR:
koc03400
]
AB185_15270 (ligA)
Enzymes [BR:
koc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AB185_15270 (ligA)
DNA replication proteins [BR:
koc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AB185_15270 (ligA)
DNA repair and recombination proteins [BR:
koc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AB185_15270 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AB185_15270 (ligA)
MMR (mismatch excision repair)
DNA ligase
AB185_15270 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AB185_15270 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Prok-E2_C
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AKL35176
LinkDB
All DBs
Position
2102491..2104515
Genome browser
AA seq
674 aa
AA seq
DB search
MESNEQKLTELRTTLRHHEYLYHVMDTPEIPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAAPLASFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNTDNLTYCCELKLDGLA
VSILYENGLLVQAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPQRLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGKLPASHS
ARLQQFKSWGLPVSERVKLCHTPEEVLTYYRQVEEDRPKLGFDIDGVVIKVDSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNIVLSERPEETREIVFPTHCPVCHSDVERVEG
EVVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFQLTPG
KLTGLDRMGPKSAQNVVDALEKSKETTFARFLYALGIREVGEATAAGLAAHFGTIEALEQ
ASIDDLQKVPDVGIVVATHVRNFFAEESNREVIAQLRKEGVRWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVI
DEDEMLRLLGESRG
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgaacgaacaaaaactgactgaactgcgaaccacgcttcgccatcatgaatat
ctctaccacgtcatggatacgccggaaatccctgatgcggaatacgatcggttaatgcgc
gaactgcgcgagctggaagctcagcaccctgagctgatcaccccggactcgcccacccag
cgcgtcggtgccgcaccgttagcctcttttagccagattcgccatgaagtcccgatgctg
tcgctggacaacgtttttgatgaggagagcttcctcgcgttcaacaagcgggtacaggat
cgcctgaaaaataccgataacctgacttactgctgcgagctcaagctggatggcctggcg
gtcagtatcctgtatgaaaacggcctgctggtgcaggcggcgacccgcggcgatggaacg
accggcgaagatattacctccaacgtgcgtaccatccgcgcgattcccctgaagctacgc
ggtgacaatattccgcagcggcttgaggtgcgcggagaggtgttcctgccgcaggctggg
tttgaaaaaattaatgaagaggcgcggcgaaccggaggtaaagtctttgctaacccgcgt
aacgcggcggcggggtctttacgccagctcgatccgcgaattaccgcgaagcgtccactc
actttcttttgctacggcgtgggcgtgctggaaggcggcaaactgcctgccagccactcg
gcgcgcttgcagcagtttaagtcctgggggctgccggtcagcgagcgtgtaaagctctgc
catacgccagaggaagtgcttacttactatcgccaggttgaagaggatcggccgaagctg
gggtttgatatcgacggcgtggtcatcaaagtcgattcgctggcgctgcaggaacagctt
ggcttcgtagcccgcgcgccgcgctgggcggtggcgtttaagtttccggcgcaggagcag
atgactttcgtgcgcgacgttgagtttcaggtcgggcgcactggcgccatcacgccggtt
gcgcgtctggagccggtacacgtcgccggggtcctggtcagcaacgcgacgctgcataat
gctgatgaaatcgagcgtctgggactgcgtatcggcgataaggtggtcattcgccgcgcc
ggcgatgttatccctcaggtcgtgaacatcgtgctctcagaacgcccggaggagacgcgt
gagatcgtgttccccacccattgtccggtatgtcattccgacgttgaacgcgtggaaggc
gaagtggtgacgcgctgtaccggcggtctgatctgcggcgcccagcgtaaagaagcgctc
aagcattttgtctcccgtcgcgccctggacgttgacggtatgggcgataaaatcatcgat
cagctggttgaaaaagagtacgtgcatacgccggccgatctcttccaactgacgccgggt
aaactcaccgggctcgatcgcatggggcccaaatcagcgcagaacgtggtggatgccctg
gagaagtccaaagagaccacctttgcccgtttcctttatgcgctggggatccgcgaagtc
ggtgaggcgacggcagccggtttagcggcccactttggcaccattgaggcgctggagcag
gcttcaattgacgatctgcaaaaagtgcccgatgtcgggattgtggttgccacgcacgtg
cgtaatttctttgccgaagagagcaaccgcgaagtgattgctcagctgcgtaaagaaggc
gtccgctggccggcgccggtcgtggtcaatgcggaagagattgatagcccctttgccggc
aaaacggtggttctgaccggtagcctgagtcagctctcccgtgacgatgcgaaagcccgg
ctggttgcgctgggggcgaaggtggcgggcagcgtgtcgaagaagaccgacctggtcatc
gccggggaggcggcgggctctaagcttgccaaagcgcaggagctgggaattgcggtgatc
gatgaagacgaaatgctgcgtctgctcggagagtcgcgtggataa
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integrated database retrieval system
