Komagataeibacter oboediens: LV478_16700
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Entry
LV478_16700 CDS
T08952
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
koi
Komagataeibacter oboediens
Pathway
koi03030
DNA replication
koi03410
Base excision repair
koi03420
Nucleotide excision repair
koi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
koi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LV478_16700 (ligA)
03410 Base excision repair
LV478_16700 (ligA)
03420 Nucleotide excision repair
LV478_16700 (ligA)
03430 Mismatch repair
LV478_16700 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
koi03032
]
LV478_16700 (ligA)
03400 DNA repair and recombination proteins [BR:
koi03400
]
LV478_16700 (ligA)
Enzymes [BR:
koi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LV478_16700 (ligA)
DNA replication proteins [BR:
koi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LV478_16700 (ligA)
DNA repair and recombination proteins [BR:
koi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LV478_16700 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LV478_16700 (ligA)
MMR (mismatch excision repair)
DNA ligase
LV478_16700 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LV478_16700 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
RUBY_RBDX
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WEQ52103
LinkDB
All DBs
Position
3099987..3102134
Genome browser
AA seq
715 aa
AA seq
DB search
MPHDPSSGSLSEQARRLLADATAMEQDEPHAKAVLARLATVLPALDAAYHQNDAPLVDDA
TYDRLRRLNTELETRFPGLRRIDSPAEKVGAPASGPFHRHRHMVPMLSLDNVFSREEFEG
FISRIARFLGLGEDQARALSFVAEPKIDGLSISLTYEHGRFVRGTTRGDGTEGEDVTANL
RTLKDIPEQLPAPFPDLIEIRGEVFLSKQAFLELNAAQERAGEKSFANPRNAAAGSLRQL
DPAVTAQRPLSLFAYAAGFCDAPLAATHHGYLEQLAAWGFVVNPLSTRVKDAAEAEAFMD
RLTLERSALDYDIDGVVYKLDDRALQDRLGFAGRAPRWAVAWKFAAEQAVTRLEKIDIQV
GRTGALTPVAFLEAVNVGGVIVTRASLHNEDEIARKDIREGDLVHVQRAGDVIPQVTGVV
LPRDHDRPPFHFPHTCPICGAHAERPEGEVVWRCSGGLTCPAQVVERLIHFVSRDAFDID
GLGDRTIVEFHELGWLRTPADIFRLPARETDIAARDGWGKVSARNLVRAIEARRTIELSR
LIYALGIRRIGINNARLLARHYGSMANWRQQMEKAAVIGSDERLELGSITGIGSAIADEL
VSFFAESHNRATLDDLTSVLTQVTDEEMVAAGALSGKTIVFTGTLTTMTRPEARAVAERL
GARVSDSVSRKTDLVVLGEKAGSKARKATELGVATMDEASWRTLAGMPPAGTDPA
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgccccatgacccgtcatccggttccctgtccgaacaggcgcgccgcctgctggccgac
gcgaccgcaatggaacaggacgaaccccatgcgaaagcggtgctggcgcggcttgccacc
gtgctgcccgcgctggatgcggcctatcaccagaatgacgcgccgctggttgatgatgcg
acgtatgacaggctgcgtcggctgaataccgaactggagacgcgctttcccggcctgcgc
cgcattgacagcccggcggaaaaagtcggcgcgcccgccagcggtcccttccaccgccac
cggcacatggtgcccatgctgtcgctggacaatgtgttctcgcgggaggaattcgaaggt
ttcatcagccgcatcgcccgtttcctcgggctgggggaggatcaggcccgcgccctgtcc
tttgtcgcggaacccaagattgacggcctgtccataagcctgacctacgaacatggccgt
ttcgtgcgtggcaccacacgcggcgacggcaccgaaggcgaggacgtgaccgccaacctg
cgcacgctgaaggacattcccgaacagttgcccgcccccttccccgacctgatcgaaatc
cggggcgaggtgttcctgtccaagcaggcattcctggaactgaacgcggcacaggaacgc
gcgggggaaaaatccttcgccaatccccgcaacgccgcggccgggtcgctgcgccagctt
gatccggcggtgacggcccagcgtccgctatccctgttcgcctatgccgcgggcttctgt
gacgcgccactggccgcgacccatcacggctaccttgaacagcttgcagcgtgggggttc
gtggtcaatccgctcagcacgcgggtgaaggacgcggccgaggccgaagccttcatggac
cggctgacgctggaacgctcggcgctggattatgatatcgatggcgttgtgtacaagctc
gatgaccgcgcgctgcaggaccggcttggtttcgcggggcgtgcgccacgctgggcggtg
gcgtggaaattcgcagcagagcaggccgtcacccgccttgaaaaaatcgacatacaggtt
ggccgcaccggggcgctgacgccggtggcattcctggaggccgtcaatgtgggtggcgtg
atcgtcacccgcgccagcctgcacaatgaagacgagatcgcgcgcaaggacatccgcgag
ggcgatcttgtgcatgtgcagcgcgcgggcgacgtgatcccgcaggtgaccggtgtggtg
ctgccgcgcgaccatgaccgcccgcccttccacttcccccatacctgtccgatctgtggc
gcacatgccgaacggccggaaggcgaggtcgtgtggcggtgttcgggcggcctgacctgc
cccgcgcaggtggtggagcggctgatccatttcgtatcgcgcgatgcattcgacattgac
gggctgggcgaccgcacgatcgtggaattccacgaactgggatggctgcgcacgcccgcc
gatattttccgcctgcccgcgcgcgaaacggacatcgcggcgcgtgacggatggggcaag
gtatcggcccgcaatctggtgcgtgcgatcgaggcgcggcgcacaatcgaactgtcgcgc
ctgatctacgcgctgggcatccgccgcatcggtatcaacaatgcccgcctgctggcgcgg
cattacgggtccatggccaactggcggcagcagatggaaaaggccgccgtcatcggatcg
gacgagcggctggaactgggctcgatcaccggcatcgggtcggcgattgcggatgaactg
gtgtcgttctttgccgaatcccataaccgcgcgacgctggatgacctgacatcggtgctg
acgcaggtcacggatgaggaaatggtggccgcaggcgcgctgtcgggcaagaccatcgtc
tttaccggcacgctgaccaccatgacccgccccgaggcccgtgccgtggccgaacggctg
ggtgcgcgcgtatcagacagcgtttccagaaaaaccgaccttgtggtgctgggggaaaag
gccgggtccaaggcgcgcaaggcgaccgaactgggtgttgccaccatggatgaggccagc
tggcgcacgctggcgggcatgccaccagccgggaccgatcccgcctga
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